Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04247 ATGGGTGAAATAGGTCCATATTTGGCAGTGTTTATAATACAATTAATTTATTCTGGCATGACTTTGTTATCTAAGGCTGTGTTTAACGGAGGAATGAAAACTTCTGTGTTTGTTTTTTATAGACAACTTATTGGAGCCATTGTTATGGTCCCTCTAGCTTTGATATTTGAAAGGAAACAAGCTGTGCCAGTGACATTCTCATTTATGACAATATTCAAGATTTTTATGCTTTCATTATTGGGAATTACTTTAACTCTGAATGTGCATGGCATTGCCCTTTCTTATACGTCTGCTATGCTGGCTGCTGCAATTGTTAATTGCCTCCCTGCTTCAACATTCTTCTTTGCTGTTCTCCTCAGAGTGGAGAAGGTAAATTTAAGGACAAAATCTGGAATTTCAAAGATAGGGAGTGTATTATTGTGCATGGCTGGTGTAGCAATCCTTGCATTTTACAAAGGACCCCAGTTACAGGTTTATCATCTCCTATCTAGATATCATCACAACAATCAACAACATGAAGATCATTTTTCATATAACAAAAAATGGATTTTGGGTTCTTTACTATTGTTCCTAGCTACCATCATGTGGAGTTTGTGGCTTGTACTTCAGGCTCAATTACTTAAAAGTTACCCTTCAAAGCTAACATTCATGAGCATTCAGAGCTTATCAAGTGCAATTCAGTCATTTTTCATTGCCATAGCTTTTGAAAGAGATATTGAGCAGTGGAAGTTGGGATGGAATATGAGACTGCTAGCAGTTGTTTACTGTGGGACACTAGTGACTGCAGTTGCATACTACCTGCAAGCATTAGTGATTGATAAGAAAGGACCAGTTTTCCCAGCAACCTGGAATCCACTAAGCTTTATAATTGCTACCATTGGTTCTGTTTTGCTCTTGGGAGAGCCATTATGTTTAGGAAGTGTTTTGGGTGGGATTCTGCTGGTTTTAAGTCTTTACACTGTTTTGTGGGCAAAAAGCAAAGAAGGAGTCACTAATCAAAATTCTTTACCTATTCAAGCATATAAAGAATGTGCAGGTCAGGTGAAAACAGATGTAGCATGTAGCAAATCACCACAATGA 1080 0.375 MGEIGPYLAVFIIQLIYSGMTLLSKAVFNGGMKTSVFVFYRQLIGAIVMVPLALIFERKQAVPVTFSFMTIFKIFMLSLLGITLTLNVHGIALSYTSAMLAAAIVNCLPASTFFFAVLLRVEKVNLRTKSGISKIGSVLLCMAGVAILAFYKGPQLQVYHLLSRYHHNNQQHEDHFSYNKKWILGSLLLFLATIMWSLWLVLQAQLLKSYPSKLTFMSIQSLSSAIQSFFIAIAFERDIEQWKLGWNMRLLAVVYCGTLVTAVAYYLQALVIDKKGPVFPATWNPLSFIIATIGSVLLLGEPLCLGSVLGGILLVLSLYTVLWAKSKEGVTNQNSLPIQAYKECAGQVKTDVACSKSPQ 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04247 359 PANTHER WAT1-RELATED PROTEIN 6 329 IPR030184 GO:0016020|GO:0022857
Trre5g04247 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 152 - -
Trre5g04247 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 251 326 - -
Trre5g04247 359 Pfam EamA-like transporter family 7 133 IPR000620 GO:0016020
Trre5g04247 359 Pfam EamA-like transporter family 184 322 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04247 Trre-Chr5 44431748 44437859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04247 6 256 Nodulin-like Gene Family AT5G64700 54.475 9.33e-82 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04247 - - vun:114162763 454.907