Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04246 ATGACACTTCTTCTCCGAAAGAATCTTCTATTTTTCACTTCTTCACATTCTTCATTTCAACCTCGCACACTTCTTCTCCGTCTTCAACTCTGCGAATTCTCATCTTCTTCCACTGCGTATTCTCACTGGAAGCGTCACGATGAAGAATCGCGCAATGTTAGGGTTTCTGTTTGGTGGGATTTCGAGAACTGTAACGTGCCTGTTGGTGTTAATGTTTCCAAAGTAGCACCTGCTATCACTGACGCCGTTAGAGCTAACGGAATTAAAGGTCCTGTTCATATTACTGCTTTCGGCGATGTTTTACAGCTTTCTAGATCTAATCAAGAAGCACTTGCTTTCACTGGGATTCATCTTTCTCATATCCCCAATGGTGGAAAGAACAGTGCTGATAGATCTCTTCTTGTTGATCTTATGTATTGGATTTCCCAAAATCCACCGCCTGCACATCTCTTTCTGATATCTGGTGATAGAGACTTTGCTGGCATATTACACCGATTAAGGATGAACAACTACAATATCTTGCTGGCAATTCCCGGAAAGGCTCCTGATGTTCTTTGCAGTGCAGCAACCATAATGTGGCAGTGGAGTTCATTGCTCAAGGGAGAAAATCTAACTGGGAAGCATTTCAACCACCCACCTGATGGTCAGTTTGGTTCTTGGTATGGAAACTCTAAAGTGCCTCTTGAAAACCCCTTTTCAGCTGTCGAGCAGTCTCCATCTTCACAAAAAGTACAAATTGTGGAAATCAATGAACCTTCCTCAGACTTAAAGTCAGCTGGAGGAGAACCAAAGCCAGTTATGAGGATTATTAAGCATATATTGAGTTTACATCCAAATGGTATAACCATTGGAGATCTTCGTGAAGAGCTGGTAAAATGTAATGTGTCTTTGGGTAGAAACATATTTGGATATAAAAGGCTTCACCGCTTTCTGTCAGCAATGCCAAATGTACATCTCCAGGAATTAGGACATGGTAAGATTTGTGTGAATTTGCTCCCCTCAGAGTCCCCCGAACCCTCTGAAAGCAGCAGTACTCTATCAACGGCATCTGCTGTTGAGAATGAGGAGAGGGGCTACACAGCAACTCCAAAGCTACACAGTGAAGATAAAGACATGGATACAGACGTAAGATCTAAAAAGTTGTCTAATGATGACATTGTTAGGTCTGTGGATGCAAGTCCAAAAGTTCTTGAAGAATATACTACTTCAGGGAATCCCTCTGCTGGTATTGATCAAACAATGGTGGAAAACAATGATATAGCAATTTATGAATCTGGAAAGGAGGTTGATGATCAAATCCCGTATTCTTCAGCAAAGAACAAACATGAGAACCAACCTAGAAACAGACATGAGAACCAACCTATAAAGGAGGTTGATGATCAAAGCCCATATTCTTCAGCAGCTGGTGACTCTCAAAGACCCGATGGTGCTGAAACTTACAGCAAAAGATCAACTTTCTTTAACTGGATTAGAAATTGGTGGCCATTTTGGAAAAGCAATGCAAAGGATGATGATTTGACTGTTCATCAGAATAAGGTGACTAGTAATTTTGAGGATTCAAAGTTATCTGAACTGGACCAGATTGCTAGTAATCTTGAAGAGCCCAAACCATTAGAACCACACCAGGATGTCAGTCATTCTGGAAAGCCTGAGGACTCCAAGTTATCTGAACTAGACCAGACTGCTAATAATCTCGAAGAGCCCCAGCGATTTGAACCACACCAGGATGTCAATCAATCAGGAAAGCCTGTGTTATTTTCTAGTGGTTCCTTTTGGAATGAGATGGAATCTTTTGTTTTCAGCCCTAAAGGATCGCTTCTTATTTCCCAGTCTAGAAGCAGGGAGGATTTGGTTCGTAAATTACAAAAGTATCAACCCATTGTTCTCAAATCTCTTGCTGAAAATGATATCTTTCAATTGGTGGAATTGTTAATAGCAGAACAAAAATGGTTGGAGGAAAGCCCCTCACAAGCATTTCCTTTTAAACTAACTCGATCAGTTCAGAAGAGCGCGTCAGGCCTGACTAATGGTTCAAATAGTTTGAGATCTTTCTTTGTAAGTAGTAGAACATCGCAGTCCAACTTACAAAAGTCAGTTGAAAATGACGGGGAGAAACACACTCAGAGTATTCAGCAAACGGGAGTTCCCAGACTTGCCACTGAAAAGAAACATACCGAGAGGTCTAGAAGTGGTGTATTACAAGATTGTCAGAAACTGCTAACTGATATATTGAGGGAACATCCAGAGGGATATAATATAGGCTGTCTTCGAAGACAATTTAATGATAGATATGGCTATGAGCTTGACTTAAAGAAGCTTGGTTATAAGAAGATGGCACACTTGATACAGATAATGCCTGGGGTTAAACTCCAATCCAGTCATATTTATCCTTCTGATCCTGCTGTTTGTGCTTCCGACTCAGAAACTTCTATCCTCAAAACTCTAGCAACCAATGCCAGTCATGAAAAATTAAACTCAGATAATGAATTATTTGATACAGCCCCAAAAGAGTATAACAAGGAATCTCCTTGGGAGGAATTAGGCCCTGTTTCTGCTAAAAACCTTGGTCAGAATGATCTGGAATCAAATTTAAGTCAGAAAGCAATCGAACTGGACACACCAAAGGGTCCTGATTATGAACCTATTGTCTTAGATTATGATTCTTCTGATACTGAAGGGGATAACTCTTGTGAAATTCAACCAGAAGATCAAGGAAAGGCAAAATATGATGAGCAAGACAGTTCTTTTTGGCAAGCTCTGGATTCCTGGCATAGCACCAAGGAAGAAGAGAACAGTGTCCATAAATCCGATAACATTGCTGACTTGAGCAATTCTCTGTTTGACATATTAAATTCATCCACAGAATCCAAACAGAGTGTTGTCGTTTCCAAAAATACTTTAGGGAATCATAGAGAAAAGCAAAGATCTCAAAAGTATTCATTTGTTGCTGACCCGGCCTTACCCCCCAACAAGGACATGTTTTTGGGTGGGCTACTGGATGGCATGAAGAAAGAGGATGAGTCAAAGATGCAAAACTGA 3039 0.4061 MTLLLRKNLLFFTSSHSSFQPRTLLLRLQLCEFSSSSTAYSHWKRHDEESRNVRVSVWWDFENCNVPVGVNVSKVAPAITDAVRANGIKGPVHITAFGDVLQLSRSNQEALAFTGIHLSHIPNGGKNSADRSLLVDLMYWISQNPPPAHLFLISGDRDFAGILHRLRMNNYNILLAIPGKAPDVLCSAATIMWQWSSLLKGENLTGKHFNHPPDGQFGSWYGNSKVPLENPFSAVEQSPSSQKVQIVEINEPSSDLKSAGGEPKPVMRIIKHILSLHPNGITIGDLREELVKCNVSLGRNIFGYKRLHRFLSAMPNVHLQELGHGKICVNLLPSESPEPSESSSTLSTASAVENEERGYTATPKLHSEDKDMDTDVRSKKLSNDDIVRSVDASPKVLEEYTTSGNPSAGIDQTMVENNDIAIYESGKEVDDQIPYSSAKNKHENQPRNRHENQPIKEVDDQSPYSSAAGDSQRPDGAETYSKRSTFFNWIRNWWPFWKSNAKDDDLTVHQNKVTSNFEDSKLSELDQIASNLEEPKPLEPHQDVSHSGKPEDSKLSELDQTANNLEEPQRFEPHQDVNQSGKPVLFSSGSFWNEMESFVFSPKGSLLISQSRSREDLVRKLQKYQPIVLKSLAENDIFQLVELLIAEQKWLEESPSQAFPFKLTRSVQKSASGLTNGSNSLRSFFVSSRTSQSNLQKSVENDGEKHTQSIQQTGVPRLATEKKHTERSRSGVLQDCQKLLTDILREHPEGYNIGCLRRQFNDRYGYELDLKKLGYKKMAHLIQIMPGVKLQSSHIYPSDPAVCASDSETSILKTLATNASHEKLNSDNELFDTAPKEYNKESPWEELGPVSAKNLGQNDLESNLSQKAIELDTPKGPDYEPIVLDYDSSDTEGDNSCEIQPEDQGKAKYDEQDSSFWQALDSWHSTKEEENSVHKSDNIADLSNSLFDILNSSTESKQSVVVSKNTLGNHREKQRSQKYSFVADPALPPNKDMFLGGLLDGMKKEDESKMQN 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04246 1012 Gene3D - 46 196 - -
Trre5g04246 1012 MobiDBLite consensus disorder prediction 695 730 - -
Trre5g04246 1012 Gene3D - 261 337 IPR041966 -
Trre5g04246 1012 ProSiteProfiles OST-type HTH domain profile. 262 333 IPR025605 -
Trre5g04246 1012 MobiDBLite consensus disorder prediction 359 380 - -
Trre5g04246 1012 MobiDBLite consensus disorder prediction 333 380 - -
Trre5g04246 1012 MobiDBLite consensus disorder prediction 998 1012 - -
Trre5g04246 1012 MobiDBLite consensus disorder prediction 436 457 - -
Trre5g04246 1012 CDD LOTUS 733 788 - -
Trre5g04246 1012 MobiDBLite consensus disorder prediction 993 1012 - -
Trre5g04246 1012 PANTHER LIMKAIN B LKAP 38 740 IPR024768 GO:0005777|GO:0010468
Trre5g04246 1012 MobiDBLite consensus disorder prediction 536 556 - -
Trre5g04246 1012 MobiDBLite consensus disorder prediction 335 355 - -
Trre5g04246 1012 CDD PIN_limkain_b1_N_like 54 178 - -
Trre5g04246 1012 MobiDBLite consensus disorder prediction 436 479 - -
Trre5g04246 1012 ProSiteProfiles OST-type HTH domain profile. 732 806 IPR025605 -
Trre5g04246 1012 MobiDBLite consensus disorder prediction 870 907 - -
Trre5g04246 1012 Pfam OST-HTH/LOTUS domain 268 328 IPR025605 -
Trre5g04246 1012 Pfam OST-HTH/LOTUS domain 733 792 IPR025605 -
Trre5g04246 1012 Gene3D - 727 794 IPR041966 -
Trre5g04246 1012 MobiDBLite consensus disorder prediction 534 558 - -
Trre5g04246 1012 Pfam NYN domain 54 189 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04246 Trre-Chr5 44416400 44420877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04246 53 201 C2H2 Transcription Factor Family AT5G61190 45.638 2.35e-37 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04246 - - tpra:123916554 1010.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04246 5 44416400 44420877 Trre5g04246 5 44416400 44420877 ECH