Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04221 ATGGATTTCGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAGCAAGAAGACAAAGATTCTTCTAAGAAGAAGAGAGAAAGTAGCGACAAAACCGAAAGGAGTTACAGAAAGCGCGATGAGATCGAAGATGGAAACGAAGAGAAGCGGAGCAAGAGGTCCAGCGGCGGCGACGATGAGCATGTTTCCAGGAAGGATAGAGATCGTGATGATGAACGCGATAAGGAGCGTCATAGGAGTGGCAGAGATAGGGATAGGGACAGAGACAGTGAGAGGAGTAGCAGAGATAGAGACAGAGATAGGGAGAAGGATAGGGACAGAGAGAGAGATAGGAGAGATAAGGACAAAGAGAGGGAGAGGAGGGAGAGAGAGAAGGAAAAGGAGAGAGAAAGGTCCCGGAGGAGTAAGAGTCGTTCTGAGCGAGATAGAGAGATAGAACGAGAGGAGAGAGAGAGGTCTCGGAGAAGCATAAGTCGTTCTGAAAGAGAAAGAGAGAGAGAACGGGAGGAGAGAGAGAGGTCCAGGAGGAGCAGAAGCCGTTCCGACCGCGATTTGGACTTGAGAGACAGCCGGAGATTTAGGGAGAAGAAAGAAGCAGCCGAGCCTGAGGCAGATCCAGAAAGGGATCAAAGAACTGTTTTTGCCTATCAGATGCCCTTAAAGGCAACAGAAAGGGATGTTTATGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGGCTGATCATGGACAGGAACTCAAGACGATCTAAAGGAGTGGGGTATATTGAATTTTATGATGCAATGTCGGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTTGGGCAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTAGTTCAATCTAATACTACTGCTGGAGTTGCTGGTGTGACAGGACCATATGGAGCTGTGGACAGAAAACTTTATGTGGGGAACCTTCACTTCAATATGACTGAGAGCCAGTTGAGGGAGATTTTTGAGCCATTTGGTACTGTGGAGGTTGTTCAACTGCCTCTTGACCTGGAGACAGGACACTGCAAGGGTTTTGGGTTTATTCAATTTGCCCATCTAGAGCATGCCAAGGCTGCCCAGAGTTTAAATGGAAAATTAGAAATTGCTGGCCGAACTATCAAGGTTTCATCTGTAGCAGACCACGTTGGAAGCCAAGATACAACAGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGCTGGATCGCTCTGGAATTGCTGCAAGCATTGGTTTACCTATAAATGGGACAGCTCCTGCTCCGCAGACATTTAGTTTGCCTATTGGTAATGCTGGATTAATACCAGCACTAGCTCTACCAACTCAAATTATGCCTACCCAAGTTGCCGAACCTGTCGGAACCCCCAGCAACTGTTTACTGTTGAAGAATATGTTTGATCCATCCACTGAGACAGAGCCAGATTTTGATCTGGACATTAAAGAAGATGTAGAAGAAGAGTGTTCTAAATATGGACGGGTGAAGCATATCTATGTTGACAAAAACAGTGCGGGTTTTGTGTATTTGATGTTTGAAACAGTGGAAGCAGCAAGTGCTGCTCAGCGTGCAATGCACATGAGGTGGTTTGCACGGAAAATGATTTCAGCTATATACATGCAACCTCAGGTATATGAAGCCAAGTTTAAAGGGGAAGTTTGA 1731 0.4598 MDFDEYDYLEKTVEEQEDKDSSKKKRESSDKTERSYRKRDEIEDGNEEKRSKRSSGGDDEHVSRKDRDRDDERDKERHRSGRDRDRDRDSERSSRDRDRDREKDRDRERDRRDKDKERERREREKEKERERSRRSKSRSERDREIEREERERSRRSISRSEREREREREERERSRRSRSRSDRDLDLRDSRRFREKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTAGVAGVTGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVADHVGSQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPINGTAPAPQTFSLPIGNAGLIPALALPTQIMPTQVAEPVGTPSNCLLLKNMFDPSTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEAKFKGEV 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04221 576 SUPERFAMILY RNA-binding domain, RBD 204 289 IPR035979 GO:0003676
Trre5g04221 576 NCBIfam splicing factor, CC1-like family 95 572 IPR006509 GO:0003723|GO:0005634|GO:0006397
Trre5g04221 576 MobiDBLite consensus disorder prediction 12 210 - -
Trre5g04221 576 Coils Coil 107 131 - -
Trre5g04221 576 Gene3D - 141 297 IPR012677 -
Trre5g04221 576 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 406 500 IPR029123 -
Trre5g04221 576 Coils Coil 143 177 - -
Trre5g04221 576 Gene3D - 309 405 IPR012677 -
Trre5g04221 576 SUPERFAMILY RNA-binding domain, RBD 478 564 IPR035979 GO:0003676
Trre5g04221 576 SUPERFAMILY RNA-binding domain, RBD 312 388 IPR035979 GO:0003676
Trre5g04221 576 CDD RRM1_RBM39_like 212 284 - -
Trre5g04221 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 391 IPR000504 GO:0003723
Trre5g04221 576 FunFam Splicing factor CC1-like 297 402 - -
Trre5g04221 576 Gene3D - 477 575 IPR012677 -
Trre5g04221 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 288 IPR000504 GO:0003723
Trre5g04221 576 SMART rrm1_1 314 387 IPR000504 GO:0003723
Trre5g04221 576 SMART rrm1_1 483 560 IPR000504 GO:0003723
Trre5g04221 576 SMART rrm1_1 212 284 IPR000504 GO:0003723
Trre5g04221 576 MobiDBLite consensus disorder prediction 1 210 - -
Trre5g04221 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 385 IPR000504 GO:0003723
Trre5g04221 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 280 IPR000504 GO:0003723
Trre5g04221 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 505 556 IPR000504 GO:0003723
Trre5g04221 576 FunFam RNA-binding protein 39 isoform X1 204 296 - -
Trre5g04221 576 FunFam Splicing factor, CC1-like protein 477 576 - -
Trre5g04221 576 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 572 IPR006509 GO:0003723|GO:0005634|GO:0006397
Trre5g04221 576 CDD RRM3_RBM39_like 481 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04221 Trre-Chr5 43976686 43983624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04221 285 386 Eukaryotic Initiation Factors Gene Family AT4G34110 34.951 5.33e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04221 K13091 - gmx:100802446 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05144 7 58038230 58043753 Trre5g04221 5 43976686 43983624 ECH
Trre5g04221 5 43976686 43983624 Trre5g04221 5 43976686 43983624 ECH
Trre7g05144 7 58038230 58043753 Trre5g04221 5 43976686 43983624 PCT