Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04219 ATGTTATTTCCAGGTTTGAATAGGGAAAGAGAAATGTCTGCAATGATCTCAGCTTTGACTCATATTGTCTCTGGAGATGTTCCAATCACAAACGGTGCTGATAATAATATTCATTATTATAATAATGCAATTGAAGAAAGGCTTGGTTTTACATCAAATATTAACATGTCTTCTAGTTCTAGTTCTTCTACAACAACACAATCTTTGTCTTCTTCATCTAATTATGTTGCTAGTTCTTCTCTCAAGAGAACTAGGGAAGAAGATGATAGATCTTTTGGTGATCAATTCTTGCTTCAAGGTGGTTACTCCCCTGCTTTGCCAACAACAAATGCAGAAAGTTCAAGAAATTTTAGGACAACAACAACGAGAGTAACAACAACAAGAGAAATGGGAAATGCAGTATATGAATATAAAAGAACAGAGAATGTAGTAAGAGAAAGAGAAGAGAAAAGAAAATACAGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCTGCAGAGATAAGAGATCCATTCAAAGCAGCAAGAGTATGGTTAGGTACATTTGAAACAGCTGAAGCAGCTGCTAGAGCATATGATGAAGCTGCTCTTCGTTTTAGAGGAAACAAAGCTAAACTTAATTTCCCTGAAAATGTTACTCTTCGTCACCCTCCAACAACTAGTAGTACTAATCAATGGAATGTTTCGAATTCGGTGAATTCGATTGTTTCTATTACAACTTCAACTGATCCTGTTGTTCATACTCGACCTTTTACTTCTTCTGAACCTTCAACCAATTTTTATGATCGTTTTCAGTTTTCGGGTATTCCTTCTACAACAAGGAATGTTTATGATGATAATGTGATTTTGACATCTACAATGGCTTCCCATCTTCAATCATCGTCGTCACCAGCTTCATCTTTGGCACCTTCTTCTATGCAGACGAATAATTCGATCTCTTTGTTTTATAATTCTACCCAGTTGCCACCATGGTCGGCTTCGGATCATAGCTCTTCTTCCTCTAGATGA 1008 0.369 MLFPGLNREREMSAMISALTHIVSGDVPITNGADNNIHYYNNAIEERLGFTSNINMSSSSSSSTTTQSLSSSSNYVASSSLKRTREEDDRSFGDQFLLQGGYSPALPTTNAESSRNFRTTTTRVTTTREMGNAVYEYKRTENVVREREEKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRHPPTTSSTNQWNVSNSVNSIVSITTSTDPVVHTRPFTSSEPSTNFYDRFQFSGIPSTTRNVYDDNVILTSTMASHLQSSSSPASSLAPSSMQTNNSISLFYNSTQLPPWSASDHSSSSSR 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04219 335 CDD AP2 152 211 IPR001471 GO:0003700|GO:0006355
Trre5g04219 335 SMART rav1_2 152 215 IPR001471 GO:0003700|GO:0006355
Trre5g04219 335 MobiDBLite consensus disorder prediction 56 80 - -
Trre5g04219 335 FunFam Ethylene-responsive transcription factor 2 151 210 - -
Trre5g04219 335 Gene3D AP2/ERF domain 151 211 IPR036955 GO:0003700|GO:0006355
Trre5g04219 335 SUPERFAMILY DNA-binding domain 152 210 IPR016177 GO:0003677
Trre5g04219 335 Pfam AP2 domain 152 201 IPR001471 GO:0003700|GO:0006355
Trre5g04219 335 ProSiteProfiles AP2/ERF domain profile. 152 209 IPR001471 GO:0003700|GO:0006355
Trre5g04219 335 MobiDBLite consensus disorder prediction 56 88 - -
Trre5g04219 335 PRINTS Ethylene responsive element binding protein signature 153 164 IPR001471 GO:0003700|GO:0006355
Trre5g04219 335 PRINTS Ethylene responsive element binding protein signature 175 191 IPR001471 GO:0003700|GO:0006355
Trre5g04219 335 PANTHER DNA-BINDING DOMAIN 77 289 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04219 Trre-Chr5 43954762 43956419 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04219 150 225 AP2-EREBP Transcription Factor Family AT5G61890 77.632 3.25e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre5g04219 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04219 - - mtr:11421690 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04219 5 43954762 43956419 Trre5g04219 5 43954762 43956419 ECH
Trre7g05141 7 58012645 58013921 Trre5g04219 5 43954762 43956419 ECH