Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04218 ATGTGTATGTTAAAGGTGGCGAATCCAAGAGACAAAGTTGTTATCAAAAGAGAAAATATAAATGAATCTCCAACATTGTCAAGTGAAATGTTATTTCCAGGTTTGAATAGGGAAAGAGAAATGTCTGCAATGATCTCAGCTTTGACTCATATTGTCTCTGGAGATGTTCCAATCACAAACGGTGCTGATAATAATATTCATTATTATAATAATGCAATTGAAGAAAGGCTTGGTTTTACATCAAATATTAACATGTCTTCTAGTTCTAGTTCTTCTACAACAACACAATCTTTGTCTTCTTCATCTAATTATGTTGCTAGTTCTTCTCTCAAGAGAACTAGGGAAGAAGATGATAGATCTTTTGGTGATCAATTCTTGCTTCAAGGTGGTTACTCCCCTGCTTTGCCAACAACAAATGCAGAAAGTTCAAGAAATTTTAGGACAACAACAACGAGAGTAACAACAACAAGAGAAATGGGAAATGCAGTATATGAATATAAAAGAACAGAGAATGTAGTAAGAGAAAGAGAAGAGAAAAGAAAATACAGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCTGCAGAGATAAGAGATCCATTCAAAGCAGCAAGAGTATGGTTAGGTACATTTGAAACAGCTGAAGCAGCTGCTAGAGCATATGATGAAGCTGCTCTTCGTTTTAGAGGAAACAAAGCTAAACTTAATTTCCCTGAAAATGTTACTCTTCGTCACCCTCCAACAACTAGTAGTACTAATCAATGGAATGTTTCGAATTCGGTGAATTCGATTGTTTCTATTACAACTTCAACTGATCCTGTTGTTCATACTCGACCTTTTACTTCTTCTGAACCTTCAACCAATTTTTATGATCGTTTTCAGTTTTCGGGTATTCCTTCTACAACAAGGAATGTTTATGATGATAATGTGATTTTGACATCTACAATGGCTTCCCATCTTCAATCATCGTCGTCACCAGCTTCATCTTTGGCACCTTCTTCTATGCAGACGAATAATTCGATCTCTTTGTTTTATAATTCTACCCAGTTGCCACCATGGTCGGCTTCGGATCATAGCTCTTCTTCCTCTAGATGA 1095 0.3653 MCMLKVANPRDKVVIKRENINESPTLSSEMLFPGLNREREMSAMISALTHIVSGDVPITNGADNNIHYYNNAIEERLGFTSNINMSSSSSSSTTTQSLSSSSNYVASSSLKRTREEDDRSFGDQFLLQGGYSPALPTTNAESSRNFRTTTTRVTTTREMGNAVYEYKRTENVVREREEKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRHPPTTSSTNQWNVSNSVNSIVSITTSTDPVVHTRPFTSSEPSTNFYDRFQFSGIPSTTRNVYDDNVILTSTMASHLQSSSSPASSLAPSSMQTNNSISLFYNSTQLPPWSASDHSSSSSR 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04218 364 SUPERFAMILY DNA-binding domain 181 239 IPR016177 GO:0003677
Trre5g04218 364 CDD AP2 181 240 IPR001471 GO:0003700|GO:0006355
Trre5g04218 364 ProSiteProfiles AP2/ERF domain profile. 181 238 IPR001471 GO:0003700|GO:0006355
Trre5g04218 364 SMART rav1_2 181 244 IPR001471 GO:0003700|GO:0006355
Trre5g04218 364 Pfam AP2 domain 181 230 IPR001471 GO:0003700|GO:0006355
Trre5g04218 364 MobiDBLite consensus disorder prediction 85 109 - -
Trre5g04218 364 Gene3D AP2/ERF domain 180 240 IPR036955 GO:0003700|GO:0006355
Trre5g04218 364 FunFam Ethylene-responsive transcription factor 2 180 239 - -
Trre5g04218 364 MobiDBLite consensus disorder prediction 85 119 - -
Trre5g04218 364 PRINTS Ethylene responsive element binding protein signature 182 193 IPR001471 GO:0003700|GO:0006355
Trre5g04218 364 PRINTS Ethylene responsive element binding protein signature 204 220 IPR001471 GO:0003700|GO:0006355
Trre5g04218 364 PANTHER DNA-BINDING DOMAIN 107 318 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04218 Trre-Chr5 43954762 43956506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04218 179 254 AP2-EREBP Transcription Factor Family AT5G61890 77.632 4.78e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre5g04218 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04218 - - mtr:11421690 392.504