Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04211 ATGTCAACAACAAATATTGTTAACCACCATAGCTTGTTTGATCAAGAGCAAGATCATGAGATCCATATGCAAACCGGGTTCAATATTCCTTTCCCTTCAAACATGACCTTACCTCCTTTAGGTAATTGCCATGATCAATCTTTGAAAGCTGTTCAAAAACCGCGAGAATTCGAAGATCTCAATGATCTCACTTCTAGTTTTGGAGGAGCAGGCCAACTCCTTTCCTTGAATAGATCAAGAGGAAATTCATGGGCATGGGGAGATCAAGTAAGTGATTGTTTGATGAGTAAAAGAAGTAGTGGAGGAGATGATCATCATCATCATAATCATAATCATAATCATCATATAGGTGTTTCTTCTACCATAAAAATGAAGAAAATGAAGGGAAGAAGGAAAGTGAGGGAGCCTAGGTTTTGCTTCAAGACTATGAGTGATGTGGATGTGTTGGATGATGGCTACAAATGGAGGAAGTATGGACAGAAAGTGGTCAAGAACACCCAGCATCCAAGAAGCTACTACCGTTGCACACAAGATAATTGTCGAGTAAAGAAACGTGTGGAGCGATTGGCTGAGGATCCAAGAATGGTGATAACCACATATGAAGGAAGACATGCTCATTCTCCATCAAATGAACTTGAAGATTCACAAACTCACTCTGAACTCACTAATTTCTTTTGGTAG 681 0.395 MSTTNIVNHHSLFDQEQDHEIHMQTGFNIPFPSNMTLPPLGNCHDQSLKAVQKPREFEDLNDLTSSFGGAGQLLSLNRSRGNSWAWGDQVSDCLMSKRSSGGDDHHHHNHNHNHHIGVSSTIKMKKMKGRRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSNELEDSQTHSELTNFFW 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04211 226 Gene3D WRKY domain 136 202 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g04211 226 ProSiteProfiles WRKY domain profile. 144 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g04211 226 SMART WRKY_cls 149 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g04211 226 MobiDBLite consensus disorder prediction 108 124 - -
Trre5g04211 226 FunFam WRKY transcription factor 57 135 209 - -
Trre5g04211 226 Pfam WRKY DNA -binding domain 150 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g04211 226 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 105 211 IPR044810 GO:0003700
Trre5g04211 226 SUPERFAMILY WRKY DNA-binding domain 141 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g04211 226 MobiDBLite consensus disorder prediction 97 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04211 Trre-Chr5 43777705 43780096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04211 74 226 WRKY Transcription Factor Family AT4G39410 58.602 3.23e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre5g04211 WRKY 5.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04211 - - gmx:100127389 293.893