Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04208 ATGGATATTAGCTATTTTGGAAACCCTAATCCTTCAAACCCTTATCATCACTATAATAACAATAATATAGCTTCTTCTTCTTCATCTGATTTCATTAACTTATCTGATTATCTTGTGCTAGATGATGTTGTTTTTGTTGATAGTAATAATAATAATAATCAAGAATATTACTCATCATGGTCACAAAGTTCAGAAACTGAACAATCATCAGATAAGGCAGCTTCTAGTTCCACTACCACCACTGATGTTGTCATTAATCAAGGATTAATTAGTGATGAAACCTCTATCAACAACAATAACATGACCACGACCACCACAACGACGATGCAAGTGCTTAAGCGCAAAAATGAAGGGATTAAAGAAAATACAATAGAAGTGAGCCCAAAAATCACGTTTAGAACGCGATCGCAGCTTGAGATTATGGACGACGGATATAAATGGAGGAAGTATGGAAAGAAATCAGTCAAGAATAGTCCCAATCCAAGGAACTATTATAAGTGTTCAGGAGAAAGATGTGGAGTGAAGAAAAGAGTGGAAAGGGATAGAGAAGACTCAAGCTACGTTCTAACAACTTATGAAGGTGTCCACACTCATGAGTCCCCATGCACTTCTTACTACACTAGTCCAATGTCTTCTAATTTGATCTATTCCAATCAATGGCCTTCTACAAACTCATCATCTTCTAATTAA 690 0.358 MDISYFGNPNPSNPYHHYNNNNIASSSSSDFINLSDYLVLDDVVFVDSNNNNNQEYYSSWSQSSETEQSSDKAASSSTTTTDVVINQGLISDETSINNNNMTTTTTTTMQVLKRKNEGIKENTIEVSPKITFRTRSQLEIMDDGYKWRKYGKKSVKNSPNPRNYYKCSGERCGVKKRVERDREDSSYVLTTYEGVHTHESPCTSYYTSPMSSNLIYSNQWPSTNSSSSN 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04208 229 SMART WRKY_cls 141 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g04208 229 MobiDBLite consensus disorder prediction 56 80 - -
Trre5g04208 229 ProSiteProfiles WRKY domain profile. 136 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g04208 229 Pfam WRKY DNA -binding domain 142 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g04208 229 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 49 217 IPR044810 GO:0003700
Trre5g04208 229 Gene3D WRKY domain 128 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g04208 229 FunFam WRKY transcription factor 57 127 201 - -
Trre5g04208 229 SUPERFAMILY WRKY DNA-binding domain 133 201 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04208 Trre-Chr5 43751610 43752992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04208 86 206 WRKY Transcription Factor Family AT5G64810 51.128 1.16e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre5g04208 WRKY 1.8e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04208 - - tpra:123918464 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04208 5 43751610 43752992 Trre5g04208 5 43751610 43752992 ECH
Trre1g00711 1 5351174 5356302 Trre5g04208 5 43751610 43752992 PCT