Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04205 ATGGAATTAGTCGCCGGTAAGCTCCACCACCTCGACCTCACCGGAGCATTCATTCTAGATTCACGACGCATACCACGCACCCTATCTCATACTCATCTAACCGCCAAATCCAACACTAACACTAATTTAGTTTATCCTAATCGATTATTTACCTCAAAAAAACCTAATTACACTTCACGATTATCCGCTGTTACCGCCGTCGAAGACACTCCAGTAACAGAAGACGATATCGAGTCTCTATTTTCCGATACTTCAGCCGATGAACGACGTGGAAACAACAAACAATCGAATACAGGCGCTTCAACCGTTTCGTCCGGTGTGAAGTTGGAAAATATCAGTAAAACTTATAAAGGTGTTACGGTTTTGAAAGAGGTTAATTGGGAAGTGAAAAAAGGAGAGAAAGTTGGTTTGGTTGGTGTTAATGGTGCGGGAAAAACGACTCAGATGAGGATTATTGCTGGTCTTGAAGAACCGGATTCCGGTAATGTGATAAAAGCGAAACCGAATATGAAAATTGCGTTTTTGAGTCAAGAATTTGAGGTATCACAGAGTAGGACTGTGAGGGAGGAGTTTATGAGTGCTTTTAAAGAGGAAATGGAGGTTGCTGGAAGGTTGGAGAAAGTGCAGAAGGCTCTTGAGGGTTCTGTTAATGATTTGGAGTTGATGGGGAGGCTTTTGGATGAGTTTGATTTGCTTCAGAGACGAGCACAAGCTGTTAATTTGGATGTTGTTGATTCAAAGATTAGTAAATTGATGCCTGAACTTGGTTTTGGTATCGAGGATTCGGATAGGTTGGTTGCTTCTTTTAGTGGTGGATGGCAGATGAGGATGTGTCTTGGCAAGATTCTACTTCAGGAACCAGATTTGTTGTTGTTAGATGAACCCACTAATCACCTTGATCTTGACACCATTGAGTGGCTTGAAGCCTATCTTAATAAGCAGGATGTGCCGATGGTTATCATTTCCCACGACAGAGCTTTTCTTGATCAACTATGTACAAAAATTGTGGAAACTGACATGGGTGTATCCAGGACATTTGAGGGAAATTATTCTCAGTATATAATTTCAAAGGCAACTTGGATTGAAACACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAACAGACAAGAGAGTTGATAAGTAGGTTAGGTGCCGGAGCAAGCTCAGGCCGTGCTTCTTCCGCTGAGAAGAAATTGGAAAAACTTCTGGGAGACGAACTAGTAGAGAAGCCATTTGAACGGAAACAAATGAAAATTAGGTTCCCTGTGCGTGGAAGCAGTGGAAGATCTGTTGTAACAATTAGGAACTTGGATTTTGGATTTGAGGATAAAACACTTTTCAACAAGGCAAATCTTACGATTGAAAGGGGAGAAAAGATTGCCATTCTCGGTCCAAATGGATGTGGCAAGAGTACTTTACTAAAATTGATTATGGGTTTAGAGAAGCCAACTGGCGGTGAAGTTATCCTTGGGGAGCATAATATATTGCCTAACTATTTTGAGCAGAATCAGGCTGAGGCGCTTGATCTGGAAAAGACAGTGCTTCAGACAGTAGAGGAAGTTGCAGAGGACTGGAGGAGCGACGATATTAAAGGACTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGATCGTAAAGTTTCTCTATTGAGTGGTGGTGAGAAGGCACGGCTGGCTTTCTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTTTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGGAGGCAATAACAGCTTATGAGGGCACAGTTATCACAGTATCTCATGATCGGTACTTTATAAAGCAGATAGTTAATAGAGTGATTGAAGTAAAAGATGGCGATCTACAGGATTATGCTGGGGATTATAATTATTATTTAGAGAAGAATCTTGATGCTAGGGAAAGGGAGCTTGAACGCCAAGCAGAGCTTGAGGACAAAGCTCCTAAATTGAAAGCCAAATCTAAGATGTCCAAGGCTGAGAAAGAAGCAAGGAAGAAGCAAAAGATGCAGGCCTTTCAAGCAGGAAAACAGAAGTCCAAAAGTGCAAAAAACTCAAAGAGATGGAATTGA 2106 0.4136 MELVAGKLHHLDLTGAFILDSRRIPRTLSHTHLTAKSNTNTNLVYPNRLFTSKKPNYTSRLSAVTAVEDTPVTEDDIESLFSDTSADERRGNNKQSNTGASTVSSGVKLENISKTYKGVTVLKEVNWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDSGNVIKAKPNMKIAFLSQEFEVSQSRTVREEFMSAFKEEMEVAGRLEKVQKALEGSVNDLELMGRLLDEFDLLQRRAQAVNLDVVDSKISKLMPELGFGIEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEAYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYIISKATWIETQYAAWEKQQKEIEQTRELISRLGAGASSGRASSAEKKLEKLLGDELVEKPFERKQMKIRFPVRGSSGRSVVTIRNLDFGFEDKTLFNKANLTIERGEKIAILGPNGCGKSTLLKLIMGLEKPTGGEVILGEHNILPNYFEQNQAEALDLEKTVLQTVEEVAEDWRSDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAITAYEGTVITVSHDRYFIKQIVNRVIEVKDGDLQDYAGDYNYYLEKNLDARERELERQAELEDKAPKLKAKSKMSKAEKEARKKQKMQAFQAGKQKSKSAKNSKRWN 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04205 701 FunFam ABC transporter ATP-binding protein 394 661 - -
Trre5g04205 701 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 106 695 - -
Trre5g04205 701 SMART AAA_5 458 626 IPR003593 GO:0016887
Trre5g04205 701 SMART AAA_5 131 346 IPR003593 GO:0016887
Trre5g04205 701 MobiDBLite consensus disorder prediction 649 681 - -
Trre5g04205 701 Pfam ABC transporter 450 581 IPR003439 GO:0005524
Trre5g04205 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 342 IPR027417 -
Trre5g04205 701 MobiDBLite consensus disorder prediction 81 104 - -
Trre5g04205 701 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 107 365 IPR003439 GO:0005524
Trre5g04205 701 MobiDBLite consensus disorder prediction 649 701 - -
Trre5g04205 701 ProSitePatterns ABC transporters family signature. 269 283 IPR017871 GO:0005524|GO:0016887
Trre5g04205 701 Pfam ABC transporter 122 297 IPR003439 GO:0005524
Trre5g04205 701 FunFam Putative ABC transporter ATP-binding component 108 392 - -
Trre5g04205 701 CDD ABCF_EF-3 434 625 - -
Trre5g04205 701 CDD ABCF_EF-3 107 337 - -
Trre5g04205 701 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 434 649 IPR003439 GO:0005524
Trre5g04205 701 Pfam ABC transporter 336 423 IPR032781 -
Trre5g04205 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 639 IPR027417 -
Trre5g04205 701 Coils Coil 645 681 - -
Trre5g04205 701 ProSitePatterns ABC transporters family signature. 553 567 IPR017871 GO:0005524|GO:0016887
Trre5g04205 701 Gene3D - 103 388 IPR027417 -
Trre5g04205 701 Gene3D - 398 663 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04205 Trre-Chr5 43726225 43731270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04205 431 651 Calmodulin-binding Proteins AT2G36910 26.721 2.70e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04205 - - gmx:100796907 1101.66