Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04196 ATGGCACCAAAGCAAAGAACAGCTAGAATTACCCGCAACCCTGAATTGATCAGGGGTATCGGAAAATACTCTAGGTCTACCATGTACCATAAGAGAGGTCTCTGGGCTATTAAGGCCAAACACGGCGGCGCTTTCCCTCGTCATGATCCCGTCGCTAAGCCTGAAACTCCCGCTGTCAAGCCTCCCAAATTCTACCCTGCTGATGATGTCAAGAAGCCCCTACGTAACAAGCACAAACCTAAACCTACTAAGCTCAGGGCTAGCATTACTCCTGGCACAGTGTTGATTCTTCTTGCAGGAAGATTCAAGGGAAAGAGAGTTGTGTTTCTCAAACAGCTTCCTTCTGGACTTCTTCTCGTAACCGGTCCATTCAAGATTAACGGAGTTCCTTTGAGGCGTGTGAATCAGGCTTATGTTATCGGCACATCAACCAAAGTAGACATTTCTTCAGTTAATGTTGATAAGTTTGATGACAAGTACTTTTCTAAGGAATCCCAAAAAAAGACAAAGAAGGGAGAGGGAGAGTTCTTTGAGGCAGATAAGGAGGATAAGAAAGTTCTCCCCCAGGAAAAGAAGGACGATCAGAAGACTGTCGATGCTGGTTTGTTAAAAGCCATCGAGAGTGTTCCCGACTTGAAGACTTACCTAGGTGCCAGGTTTTCCTTGAAGGCTGGTGTGAAACCCCATGAATTACTCTTTTAG 702 0.4544 MAPKQRTARITRNPELIRGIGKYSRSTMYHKRGLWAIKAKHGGAFPRHDPVAKPETPAVKPPKFYPADDVKKPLRNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISSVNVDKFDDKYFSKESQKKTKKGEGEFFEADKEDKKVLPQEKKDDQKTVDAGLLKAIESVPDLKTYLGARFSLKAGVKPHELLF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04196 233 CDD KOW_RPL6 81 233 IPR041997 -
Trre5g04196 233 Pfam Ribosomal protein L6, N-terminal domain 3 58 IPR005568 GO:0003735|GO:0005840|GO:0006412
Trre5g04196 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Trre5g04196 233 SUPERFAMILY Translation proteins SH3-like domain 87 176 IPR008991 -
Trre5g04196 233 Gene3D - 87 171 IPR014722 -
Trre5g04196 233 PANTHER 60S RIBOSOMAL PROTEIN L6 7 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Trre5g04196 233 FunFam 60S ribosomal protein L6 87 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04196 Trre-Chr5 43665093 43666810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04196 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 78.970 2.73e-120 340