Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04185 ATGAACACTTTCTTTTTACGGGAAAGGGGAAATGAACACTTATCACTTGCGAATTCAGTTAATCACATGTTTTCAAGCTTAGCTCCTCCATCGGAAGATCCTCACGGCTATTGGCACGATTGCAGATTAAACCATGCTAAATGTACCGGTTCACAAATCCAATTTCTGCAAGGATTCAGGAATCACATGCTGAATGTTGTTAGAGGCTTCTCAAGATCAAATCAAAATGGATTGTTCATAAATTCATGCTTTGCTCACTGCCAATCTGAGAGGCAAGACACATGGTTTGCTGACAACTCTCCTGTCATTGGGAACAAGGTGAGTCTTACATATCCCTATGCAGTTTTAGTTAACAAAACAGAATGGAGGTCATGA 375 0.4027 MNTFFLRERGNEHLSLANSVNHMFSSLAPPSEDPHGYWHDCRLNHAKCTGSQIQFLQGFRNHMLNVVRGFSRSNQNGLFINSCFAHCQSERQDTWFADNSPVIGNKVSLTYPYAVLVNKTEWRS 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04185 124 Pfam Pectinacetylesterase 25 106 IPR004963 GO:0016787
Trre5g04185 124 PANTHER NOTUM-RELATED 23 107 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04185 Trre-Chr5 43606260 43609239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04185 14 122 Carbohydrate Esterase AT5G26670 60.550 5.19e-43 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04185 K19882 - gmx:100810716 164.081