Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04181 ATGACTCCTCCACCCACCATCTTTCTCTCTGCGGCGGCGCATTTATTTTTCATTTTACTCACAACAACTTGCTCCGCCTCTTTCCCGGAGCTCCGATCTCTACTCGAATTCAAAAAAGGCATAACCTCAGATCCAGATGAACGAGTTCTCAACTCATGGAATCTTTCCACCATCAACGACTTCAACGAATGTCCAACTTCATGGCAAAAAATCTTCTGCGACGAACTCACCGGAAACATCACCGGAATTGTTCTCGACCACTTCAATCTCACCGGAGAATTGAAATTTCAAACTTTACTTGACCTCAAAATGCTGAAAAATCTTAGTCTCGCCGGTAACCAGTTCACCGGAAGGTTACCTCCTTCATTAGGAACGATAACTTCACTTCAGCATTTGGATCTTTCAAACAACAAATTCATCGGTCCAATTCCTGCTCGGATCAACGATCTTTGGGGTCTCAATTACCTCAATTTATCACACAATGATTTCAAAGGTGGATTTCCAACTGGTCTCAATAATCTTCAACAACTTAGGGTTCTCGATTTGCACTCTAACAAACTCTGGGCTGACATTGGTGACCTGATTTCGACTCTTCACAATGTCGAATTTCTTGATTTAAGTCAAAATCAGTTCTATGGTGGACTTTCACTTACTCTTGAAAATGTTTCATCTTTGGCTAATACTGTTCGTTTTTTGAACCTTAGTCGTAACAAATTGAATGGAGATTTTTTCACAAGTGATTCGATTACATTGTTTCGCAACTTACAAGCTTTGGATTTGAGTGATAATTTGATTAAAGGGGAGCTTCCTTCTTTCGGTTCCTTGCCTGAACTTCGGGTTCTGACGCTTGCACGGAATCTCTTCTCTGGTGCTGTTCCTGAAGAGTTGTTGCTGAGTTCAATGTCCTTGCAAGAATTGGATCTTAGCTCTAATGGCTTTTCTGGCTCAATTGCTGTAATTAACTCTACCACTTTAAATGTTTTGGATCTTTCGTCGAATAGATTATCAGGCTCGTTGCCAACATCTTTGGGAAGATGCACAGTCATAGATTTCAGCAGGAATATGTTTTCTGGCGACATTTCTGTAATAGAGAACTGGGAAGCCACTATGGAGGTTATTGATCTGAGTTCAAACAAGCTGTCAGGATCCTTGCCTTCTATTTTAGGGACATATTTAAAATTGTCTACCCTTGACTTAAGTTTTAATGAACTTAATGGATCCATTCCAGTTGGTTTAGTTACTTCAGCATCATTGACCAGACTGAATCTTTCTGGAAATCAATTGACAGGGCCGCTTTTGCTTCATGGTTCAGGGGTAAGTGAATTACTACTTATGCCTCCTGATCAGCCCATGGAATATTTTGATGTATCCAACAACTCTTTAGAAGGTGTCTTGCCTTCTGATATAGGTAGAATGATTAAGCTCAAACAGCTGAATCTGGCAAGGAATGGCTTTTCTGGACAGCTTCCAAATGAATTGAGCAAACTTATTGATTTGGAGTACCTCGATTTGTCTAACAACAAATTTACTGGAAATATTCCCGATAAGCTTTCAAATAACTTGACTGTATTTAATGTGTCCAATAATGATCTATCTGGCCCTGTTCCCAAAGATTTGCGGCGGTTTCCTTCTGCATCCTTTCACCCTGGAAATGAAGAGCTAAAGTTACCAAATAATGCTCCTGAACGTTCTGCTGCACTGCCAGATAATCCAGATGAAGGTAACCATCATAGTTCAAAGAGTAATATCAGGATAGCAATTATTCTTGCTTCTGTAGGGGCTGCTGTGATGATTGCTTTTGTTTTATTGGCTTATCATCGATCACAAGCGAAAGAATTTCGCGGGAGAAGTGATTTTGCTGGCCCAGCTACTGGAAGAGATGCCAAGTTAGGAGGACTTTCAAGGCCCTCCCTCTTCAAGTTCCATACAAATGCTCAACCCTCATCATCTTCACTGAGCTTTTCAAATGATCACTTATTGACATCCAATTCAAGGTCACTTTCTGGACAGCAGTCAGAGTTTATAACTGAAATTTCTGAGCATTGCTTGCCTGAGGGAGTGGTAGCAACCAGTTCAGCACCTCCTAATTTGATGGATAACCCTCCCATGTCATCTGGAAGGAAGTCTTCTCCTGGTTCCCCATTGTCGTCCTCACCACGCTTTATAGAGGCTTGTGAAAAGCCTGTGATGTTGGACGTTTACTCACCAGATCGACTGGCCGGAGAATTGTTTTTCCTGGATTCTTCACTAGCATTCACTGCAGAGGAATTATCTCGAGCTCCAGCTGAAGTTCTCGGAAGAAGTAGCCATGGCACTCTGTACAAAGCTACTATAGACAATGGTCATATGTTGACTGTAAAATGGTTAAGGGTGGGGCTGGTCAAACTTAAAAAGGAATTTGCTAGAGAAGTCAAAAAGATCGGTTCTATGAGGCATCCAAACATTGTCCCGTTACTAGCATACTATTGGGGGCCTAGGGAACAGGAGAGGCTTCTCTTAGCTGACTACATTCACGGAGACAACTTGGCCCTCCATCTCTATGAGACAACACCCCGGAGGTACTCTCCATTGTCATTCAGCCAGAGAATAAAAGTTGCAGTTGAAGTTGCAAGATGTCTTTTATACCTACATGATCGAGGGCTTCCCCATGGAAATCTGAAGCCGACAAATATTCTGTTAGCAGGCCCTGAATACAGTGTTTGTCTTACTGACTATGGTTTGCACCGGCTCATGACACCAGCTGGAGTTGCAGAGCAGATGCTAAATCTAGGAGCACTCGGATACCGCGCTCCAGAACTTGCTTCTGCTTCCAAACCACTTCCATCCTTTAAGGCCGATGTGTATGCACTTGGGGTGATCCTAATGGAATTATTAACAAGAAAAAGTGCAGGTGACATAATATCTGGACAATCAGGTGCTGTCGATCTTACAGATTGGGTTAGACTGTGTGAACGAGAAGGAAGGGTAATGGACTGTATAGACAGAGACATTGCAGGTGGTGAAGAATCCTCTAAAGAGATGGACCAACTTCTTGCAACATCTCTCAGGTGTATTCTCCCTGTAAATGAAAGGCCCAACATCCGACAAGTTTTTGAAGATCTCTGTTCTATATCATCATCAGCTTGA 3126 0.4223 MTPPPTIFLSAAAHLFFILLTTTCSASFPELRSLLEFKKGITSDPDERVLNSWNLSTINDFNECPTSWQKIFCDELTGNITGIVLDHFNLTGELKFQTLLDLKMLKNLSLAGNQFTGRLPPSLGTITSLQHLDLSNNKFIGPIPARINDLWGLNYLNLSHNDFKGGFPTGLNNLQQLRVLDLHSNKLWADIGDLISTLHNVEFLDLSQNQFYGGLSLTLENVSSLANTVRFLNLSRNKLNGDFFTSDSITLFRNLQALDLSDNLIKGELPSFGSLPELRVLTLARNLFSGAVPEELLLSSMSLQELDLSSNGFSGSIAVINSTTLNVLDLSSNRLSGSLPTSLGRCTVIDFSRNMFSGDISVIENWEATMEVIDLSSNKLSGSLPSILGTYLKLSTLDLSFNELNGSIPVGLVTSASLTRLNLSGNQLTGPLLLHGSGVSELLLMPPDQPMEYFDVSNNSLEGVLPSDIGRMIKLKQLNLARNGFSGQLPNELSKLIDLEYLDLSNNKFTGNIPDKLSNNLTVFNVSNNDLSGPVPKDLRRFPSASFHPGNEELKLPNNAPERSAALPDNPDEGNHHSSKSNIRIAIILASVGAAVMIAFVLLAYHRSQAKEFRGRSDFAGPATGRDAKLGGLSRPSLFKFHTNAQPSSSSLSFSNDHLLTSNSRSLSGQQSEFITEISEHCLPEGVVATSSAPPNLMDNPPMSSGRKSSPGSPLSSSPRFIEACEKPVMLDVYSPDRLAGELFFLDSSLAFTAEELSRAPAEVLGRSSHGTLYKATIDNGHMLTVKWLRVGLVKLKKEFAREVKKIGSMRHPNIVPLLAYYWGPREQERLLLADYIHGDNLALHLYETTPRRYSPLSFSQRIKVAVEVARCLLYLHDRGLPHGNLKPTNILLAGPEYSVCLTDYGLHRLMTPAGVAEQMLNLGALGYRAPELASASKPLPSFKADVYALGVILMELLTRKSAGDIISGQSGAVDLTDWVRLCEREGRVMDCIDRDIAGGEESSKEMDQLLATSLRCILPVNERPNIRQVFEDLCSISSSA 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04181 1041 SUPERFAMILY Protein kinase-like (PK-like) 762 1034 IPR011009 -
Trre5g04181 1041 Pfam Leucine Rich repeat 300 317 IPR001611 GO:0005515
Trre5g04181 1041 Pfam Leucine Rich repeat 415 430 IPR001611 GO:0005515
Trre5g04181 1041 Gene3D Ribonuclease Inhibitor 192 271 IPR032675 -
Trre5g04181 1041 ProSiteProfiles Protein kinase domain profile. 759 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04181 1041 PANTHER OS07G0626500 PROTEIN 9 105 - -
Trre5g04181 1041 Pfam Leucine rich repeat N-terminal domain 30 74 IPR013210 -
Trre5g04181 1041 SUPERFAMILY RNI-like 107 530 - -
Trre5g04181 1041 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 227 441 - -
Trre5g04181 1041 FunFam Leucine-rich repeat receptor-like protein kinase 744 836 - -
Trre5g04181 1041 Gene3D Ribonuclease Inhibitor 449 552 IPR032675 -
Trre5g04181 1041 Pfam Leucine Rich repeats (2 copies) 103 144 IPR025875 -
Trre5g04181 1041 MobiDBLite consensus disorder prediction 689 718 - -
Trre5g04181 1041 SMART LRR_typ_2 275 299 IPR003591 -
Trre5g04181 1041 SMART LRR_typ_2 323 346 IPR003591 -
Trre5g04181 1041 SMART LRR_typ_2 174 198 IPR003591 -
Trre5g04181 1041 SMART LRR_typ_2 126 150 IPR003591 -
Trre5g04181 1041 SMART LRR_typ_2 252 274 IPR003591 -
Trre5g04181 1041 SMART LRR_typ_2 496 520 IPR003591 -
Trre5g04181 1041 MobiDBLite consensus disorder prediction 535 578 - -
Trre5g04181 1041 FunFam Nuclear pore complex protein NUP107 27 193 - -
Trre5g04181 1041 Gene3D Transferase(Phosphotransferase) domain 1 838 1041 - -
Trre5g04181 1041 ProSiteProfiles Leucine-rich repeat profile. 254 276 IPR001611 GO:0005515
Trre5g04181 1041 Pfam Protein kinase domain 763 1031 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04181 1041 FunFam Pollen receptor-like kinase 1 837 1041 - -
Trre5g04181 1041 Gene3D Phosphorylase Kinase; domain 1 740 836 - -
Trre5g04181 1041 Gene3D Ribonuclease Inhibitor 272 365 IPR032675 -
Trre5g04181 1041 Gene3D Ribonuclease Inhibitor 30 191 IPR032675 -
Trre5g04181 1041 Gene3D Ribonuclease Inhibitor 366 439 IPR032675 -
Trre5g04181 1041 FunFam Leucine-rich repeat receptor protein kinase EMS1 445 538 - -
Trre5g04181 1041 MobiDBLite consensus disorder prediction 693 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04181 Trre-Chr5 43542572 43548434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04181 8 542 Receptor kinase-like Gene Family AT5G01890 33.573 2.18e-56 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre5g04181 Pkinase 4.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04181 - - gmx:100802768 1626.3