Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04180 ATGCCTGAATGTCCAGAGAAAGGTAACACACACAAATCTCTTCTAACTCTTTGTTATCCTCTTAAGGAGAGATTTGATGAGATAGGGAAGAAGATAAAGAGGGAAGGAGATCATCATCATCATCATCACCATGTTTCAAATAACTCTCATCATATGGGAAGAAGACATATGTTAGGTCCACCAGGAACCCTAAATACTATAACACCTTGTGCAGCATGTAAGCTTTTAAGAAGAAGATGTGCTCAAGAATGTCCTTTCTCTCCCTATTTCTCTCCTCATGAACCTCAGAAGTTTGCTTCTGTTCACAAAGTTTTTGGTGCTAGCAATGTCTCCAAGATGCTAATGGAGGTAGCAGAGTGTTCAAGAGCAGATGCAGCAAATAGTCTTGTTTATGAAGCAAATGTAAGATTAAGAGATCCAGTTTATGGATGCATGGGTGCAATTTCTGCATTACAACAACAGGTTCAATCTTTACAAGCTGAACTCAATGTATTAAGAAGTGAAATACTTAAATACAAATTAAGAGAAGCAGCTAACATCAACATGAATAATATGAATATGAATAATATGCTACAAGCTTCTCCTCATCATCATCATCATCATGTTTCTATGCTTCCTTCTAATTCCTCATTGGCTGTTTCAATTGCTTCTCCACCACCACCGCCACCGCCGCCGCCACCGCCTCCTCCTCCTCTTCCTCCAACTTCTAATTCATCTTCTTCCTTATACTTCCAAGAGAGGGATCCCAACAACTATAGCACAATTTCAAGTGATGATAATATTTCCTATTTTGGTTAA 798 0.3872 MPECPEKGNTHKSLLTLCYPLKERFDEIGKKIKREGDHHHHHHHVSNNSHHMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVAECSRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNVLRSEILKYKLREAANINMNNMNMNNMLQASPHHHHHHVSMLPSNSSLAVSIASPPPPPPPPPPPPPPLPPTSNSSSSLYFQERDPNNYSTISSDDNISYFG 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04180 265 MobiDBLite consensus disorder prediction 189 265 - -
Trre5g04180 265 Pfam Mitochondrial fission regulator 153 243 IPR007972 -
Trre5g04180 265 Coils Coil 148 175 - -
Trre5g04180 265 ProSiteProfiles LOB domain profile. 68 169 IPR004883 -
Trre5g04180 265 MobiDBLite consensus disorder prediction 237 265 - -
Trre5g04180 265 MobiDBLite consensus disorder prediction 215 236 - -
Trre5g04180 265 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 65 201 - -
Trre5g04180 265 Pfam Lateral organ boundaries (LOB) domain 69 166 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04180 Trre-Chr5 43533543 43534839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04180 25 186 AS2 family AT2G30340 66.265 7.34e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre5g04180 Mito_fiss_reg 6.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04180 - - gmx:100790799 295.819