Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04179 ATGGCTCCTTTAATTAAGCTAGCCATGATGAGTTTGGCTTTCTTTGTCCTCCTCATAGTTGGGAGTGCCAATGCACAACTTTCAACAAACTTTTACTCAAGTTCTTGTCCAAAACTCTCTTCCACAGTTCAATCCACGGTGAAATCCGCCATAACAAAAGAGGCCCGAATCGGTGCTTCCATCCTCCGTTTATTCGTTCATGATTGCTTTGTCAATGGATGTGATGGGTCAATTCTATTGGACGATACATCAAACTTTACGGGGGAGAAGAATGCAAACCCAAACAGAAACTCTGCTCGTGGATTCGACGTCATTGACAACATAAAAACAGCCGTAGAAAACGTATGTCCCGGAGTTGTATCTTGTGCTGACATTCTTTCCATTGCTGCCGCCGACTCTGTTGCGATTCTTGGAGGCCCAATTTGGAATGTAAAACTCGGAAGAAGAGATGCTAAGACGGCTAGTCAATCTGCTGCTAACACCAACATCCCGGCACCAACTTCCGACCTCAGTACACTTACCTCAATGTTTAGTGCTGTTGGTCTTTCCTCCAAGGACTTAGTTGCACTATCAGATACTTCATTTGCTACCACAAGACAATCAAACTGCCCAAGCACATCAGGGTCAGGGGACAGCAATTTGGCACCCCTTGATCTTCAAACTCCAACTTCTTTCGACAATAACTACTTCAAGAACCTTGTTAACAAAAAGGGTCTTCTCCATTCTGATCAACAACTTTTCAATGGTGGTTCCACTGACACCATAGTGAGTGGCTATAGTACTAATCCAAGCTCTTTTACCTCTGATTTTGCTGCTGCTATGATCAAGATGGGAGACATTAGTCCTCTCACTGGATCCAATGGAGAGATCAGGAAGAACTGTAGAGCAACCAATTAA 897 0.4381 MAPLIKLAMMSLAFFVLLIVGSANAQLSTNFYSSSCPKLSSTVQSTVKSAITKEARIGASILRLFVHDCFVNGCDGSILLDDTSNFTGEKNANPNRNSARGFDVIDNIKTAVENVCPGVVSCADILSIAAADSVAILGGPIWNVKLGRRDAKTASQSAANTNIPAPTSDLSTLTSMFSAVGLSSKDLVALSDTSFATTRQSNCPSTSGSGDSNLAPLDLQTPTSFDNNYFKNLVNKKGLLHSDQQLFNGGSTDTIVSGYSTNPSSFTSDFAAAMIKMGDISPLTGSNGEIRKNCRATN 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04179 298 FunFam Peroxidase 30 175 - -
Trre5g04179 298 PANTHER PEROXIDASE 72-RELATED 24 296 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre5g04179 298 CDD secretory_peroxidase 26 297 IPR033905 GO:0004601|GO:0042744
Trre5g04179 298 SUPERFAMILY Heme-dependent peroxidases 26 298 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre5g04179 298 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre5g04179 298 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre5g04179 298 PRINTS Haem peroxidase superfamily signature 218 233 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre5g04179 298 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre5g04179 298 Gene3D Peroxidase, domain 2 193 277 - -
Trre5g04179 298 ProSiteProfiles Plant heme peroxidase family profile. 26 298 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre5g04179 298 MobiDBLite consensus disorder prediction 197 217 - -
Trre5g04179 298 Gene3D - 30 163 - -
Trre5g04179 298 Gene3D - 278 298 - -
Trre5g04179 298 Pfam Peroxidase 43 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre5g04179 298 Gene3D Peroxidase, domain 2 164 192 - -
Trre5g04179 298 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre5g04179 298 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre5g04179 298 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre5g04179 298 PRINTS Plant peroxidase signature 216 231 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre5g04179 298 PRINTS Plant peroxidase signature 272 285 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre5g04179 298 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre5g04179 298 PRINTS Plant peroxidase signature 232 249 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04179 Trre-Chr5 43518097 43519823 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04179 25 298 Peroxidase AT5G05340 72.054 1.79e-153 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04179 K00430 - gmx:100803637 460.685