Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04175 ATGGAAGGTGTTAGTAACATTGGTTTCTCTTCAACATTCAGAGTTTCTTTGGAAACACAACTACTTTCAAAGCAGAGGAAACACAAATCTCCATGCAGTTTTATGATTCCTTTCAACTACTCTGTTAGGATTAACAAAATCTGTTGTAAACTTTCAGAAAGTGGGATTGAAGAGAACCCTACCACCAAAAGGGTCTCTAAATCTAAGGATATGATGGAAGAATATAATATTGCTATGAAGAAAATGATGAGAAACCCTTATGAGTATCATCACGATCTGGGTATGAATTATAACGTTATAACTGACAATTTGATTGTGGGATCCCAACCACAGAAACCTGAAGATGTAGATCACCTTAGGAAAGAAGAAGGTGTGGCATACATTCTAAACTTGCAACAGGATAAGGATGCTGAGTTTTGGGGTATAGACTTACAGTCAATAGTAAGAAGGAGTCGCGAACTTGAAATTAGACACATGAGGAGACCGGCAGTAGACTTTGATCCAAACTCTTTGCGAAATGCGCTACCTAAAGCAGTTTCATCTTTGGAATGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTGCACTGTACTGCAGGACTTGGAAGAGCTCCAGCAGTTGCAATTGCTTATCTGTTTTGGTTTTCTGACATGAATCTAAATGCAGCCTATGATCTGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAACAGCGATACGTGGAGCTACTTATGATTTGGCTAAGAATGATCCATGGAAGGAGCCATTTGAGAGTCTTCCAGACCATGCTTTTGGAGATATAGCTGACTGGGAGAGGAACCTGATTCAAAACCGCGTCCGTGCTCTTCGTGGAACTTGA 861 0.4007 MEGVSNIGFSSTFRVSLETQLLSKQRKHKSPCSFMIPFNYSVRINKICCKLSESGIEENPTTKRVSKSKDMMEEYNIAMKKMMRNPYEYHHDLGMNYNVITDNLIVGSQPQKPEDVDHLRKEEGVAYILNLQQDKDAEFWGIDLQSIVRRSRELEIRHMRRPAVDFDPNSLRNALPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVAIAYLFWFSDMNLNAAYDLLTSKRPCGPNKTAIRGATYDLAKNDPWKEPFESLPDHAFGDIADWERNLIQNRVRALRGT 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04175 286 Gene3D Protein tyrosine phosphatase superfamily 79 286 IPR029021 -
Trre5g04175 286 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 93 238 IPR029021 -
Trre5g04175 286 SMART dsp_5 96 238 IPR020422 GO:0006470|GO:0008138
Trre5g04175 286 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 37 255 - -
Trre5g04175 286 CDD DSP_laforin-like 95 242 IPR045204 GO:0019203
Trre5g04175 286 Pfam Dual specificity phosphatase, catalytic domain 117 236 IPR000340 GO:0008138|GO:0016311
Trre5g04175 286 ProSiteProfiles Dual specificity protein phosphatase domain profile. 96 253 IPR020422 GO:0006470|GO:0008138
Trre5g04175 286 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 79 286 - -
Trre5g04175 286 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 173 232 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04175 Trre-Chr5 43361597 43363403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04175 47 286 Protein tyrosine phosphatase (PTP) family AT3G10940 77.178 1.88e-140 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04175 - - gmx:100805592 483.796