Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04168 ATGACATTCAAGCGTAGGAATGGAGGTCGCAACAAGCATGGCCGTGGCCATGTCAAATTCATCCGTTGCTCAAACTGCGGAAAATGCTGTCCTAAGGATAAGGCTATTAAGCGTTTCCTTGTGAGGAACATTGTTGAACAGGCTGCTGTTAGAGATGTTCAGGAAGCTTGTGTTTATGATCAATACACTCTTCCTAAGCTGTATGTGAAGATGCAGTACTGTGTTTCCTGTGCCATTCACTCTCATGTTGTGAGGGTCAGATCTCGCACTGATAGGAGGAAGCGTGAGCCTCCACAGCGTTTCATCAGGCGCAGGGACGATGCACCAAGGCCTGGACAGCCTGGCCAAGCTCCCCGCCCTGCTGGACCTGGAGCTCCCCCAGTTCGTGCCTAG 393 0.514 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPRPGQPGQAPRPAGPGAPPVRA 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04168 130 ProSitePatterns Ribosomal protein S26e signature. 73 80 IPR000892 GO:0003735|GO:0005840|GO:0006412
Trre5g04168 130 MobiDBLite consensus disorder prediction 113 130 - -
Trre5g04168 130 Gene3D Ribosomal protein S26e 1 114 IPR038551 -
Trre5g04168 130 MobiDBLite consensus disorder prediction 86 130 - -
Trre5g04168 130 FunFam 40S ribosomal protein S26 1 114 - -
Trre5g04168 130 Pfam Ribosomal protein S26e 1 106 IPR000892 GO:0003735|GO:0005840|GO:0006412
Trre5g04168 130 PANTHER 40S RIBOSOMAL PROTEIN S26 1 123 IPR000892 GO:0003735|GO:0005840|GO:0006412
Trre5g04168 130 MobiDBLite consensus disorder prediction 90 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04168 Trre-Chr5 43318581 43320244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04168 1 116 Cytoplasmic Ribosomal Protein Gene Family AT2G40590 83.621 5.34e-69 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04168 K02976 - gmx:100499862 210.305