Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04151 ATGTCGTTCCCGTTCCACCGTCGATCTCAATCGGAGGTACATTTCCGAGTCCCCGACGATTTCGACCTAGAAATGGATCCCTTCGACTTCGACGCTTCTCCGATCCAATTCCAAGATCCACCACCACCACCACCACCACACGACGACCTTCTCTCTTCCTACATTGATTCCGATAATTCCGGATCCAAACTCAATTCTCCCACCGCCTATAATGCATCAGATACCGCCAGACCTAGTCACCGCCGAAGCAATTCCGCCGAAACTTCTTCTTCCTTGTTATCAGAAGGAATCGAATCTAAGAAAGCTATGTCTCCTGATAAACTCGCTCAGTTGTGGACCGTTGATCCCAAACGCGCCAAGAGGATTCTGGCTAATCGTCAATCTGCAGCGCGGTCGAAAGAGAGGAAAGCTTGTTATGTGGTTGAGCTTGAAAGAAAAATTCATACTCTTCAAACTGAAGCAACAACTCTTTCTGCTCAATTAAATCTTTTTCAGAGAGATACAAGTGGTCTGTCTAGTGAAAATACTGAGTTGAAGCTTCGATTACAAGCAATGGAGCAACAAGCTAAGTTATGTGATGCTCTAAATGATGCATTGAAGAACGAAGTTGATAGGCTCAAGCTTGCTACTGGAGAGGTAACAACCCATGCTGATACCTATGGTTTGGGAATGCATCAACTTTCATATTCTCAAGCTTCATCTTTCCTGCACCAACCACAACATGCTCCGAGTCCGAATGAATTTCAGCCCATGCAAATGCAGCAGTTTCATTCAGTCTCTTCTAACGCATCCACTCCCCACCATCCTCAGTTTGATCTACCCACTCAGTATGATTTGTCAGAAATGTTGTCAAGTGATTCTATCGGCCAGTTTCAGGGGCTGGACATTGGCCACAAGGTTTCTCATGTTCTGATGCCCGATGGTCCCTCCATTTCTGTTAATAAAACCAACAACGCCTTTTGA 963 0.4538 MSFPFHRRSQSEVHFRVPDDFDLEMDPFDFDASPIQFQDPPPPPPPHDDLLSSYIDSDNSGSKLNSPTAYNASDTARPSHRRSNSAETSSSLLSEGIESKKAMSPDKLAQLWTVDPKRAKRILANRQSAARSKERKACYVVELERKIHTLQTEATTLSAQLNLFQRDTSGLSSENTELKLRLQAMEQQAKLCDALNDALKNEVDRLKLATGEVTTHADTYGLGMHQLSYSQASSFLHQPQHAPSPNEFQPMQMQQFHSVSSNASTPHHPQFDLPTQYDLSEMLSSDSIGQFQGLDIGHKVSHVLMPDGPSISVNKTNNAF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04151 320 SUPERFAMILY Leucine zipper domain 117 171 IPR046347 GO:0003700|GO:0006355
Trre5g04151 320 Gene3D - 116 188 - -
Trre5g04151 320 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 115 178 IPR004827 GO:0003700|GO:0006355
Trre5g04151 320 MobiDBLite consensus disorder prediction 25 92 - -
Trre5g04151 320 Coils Coil 182 202 - -
Trre5g04151 320 CDD bZIP_plant_RF2 118 167 IPR044759 GO:0003700|GO:0006355
Trre5g04151 320 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 6 258 - -
Trre5g04151 320 SMART brlzneu 113 177 IPR004827 GO:0003700|GO:0006355
Trre5g04151 320 MobiDBLite consensus disorder prediction 53 92 - -
Trre5g04151 320 FunFam probable transcription factor PosF21 116 169 - -
Trre5g04151 320 Coils Coil 140 160 - -
Trre5g04151 320 Pfam bZIP transcription factor 117 175 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04151 Trre-Chr5 43167751 43170662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04151 4 296 bZIP Transcription Factor Family AT2G40620 50.456 1.35e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre5g04151 bZIP_1 8e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04151 - - aprc:113852914 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04151 5 43167751 43170662 Trre5g04151 5 43167751 43170662 ECH