Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04150 ATGCGTGCGTGTCAAAAAAGGTATTGTCTACTTTGGATCAGAAACTACCGGTGCATCCACAATGTCTCTCCATCAACGCCTCCATCGACTTTTACTCGACACGGATTCAGCTTCAACAACTGCATCAGGTATGCTTTCGAGACACAAGACGAAAGAATAGCTCGTTTAACATCGAAGGGTTTAAAGAAGAGTGCATTGCGTAAGATACCTATAGTTGTTTATGATTCAGGTAGTATTAGTACTAGTTTTGTAGCTACAGATTGTCCAATTTGTCTTGGAGAGTTTATGGATGGTGAGAAAGTTAGAGTTTTGCCAAAATGTAACCATGGATTCCATGTAAAGTGTATCGATAAATGGCTGCTTTCACACTCCTCTTGTCCTACTTGTAGACAGTCTTTGCTTGAGTATCCAACTAGCTCTGAAGCTTCATCTGTGGCTGTGATTGTTGCTGCAGCTGTAGAGACCACAAATCAACGGCCTTAA 483 0.4141 MRACQKRYCLLWIRNYRCIHNVSPSTPPSTFTRHGFSFNNCIRYAFETQDERIARLTSKGLKKSALRKIPIVVYDSGSISTSFVATDCPICLGEFMDGEKVRVLPKCNHGFHVKCIDKWLLSHSSCPTCRQSLLEYPTSSEASSVAVIVAAAVETTNQRP 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04150 160 FunFam RING-H2 finger protein ATL72-like 52 134 - -
Trre5g04150 160 Pfam Ring finger domain 87 130 IPR001841 -
Trre5g04150 160 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Trre5g04150 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 135 IPR013083 -
Trre5g04150 160 SMART ring_2 88 129 IPR001841 -
Trre5g04150 160 CDD RING-H2_EL5-like 87 130 - -
Trre5g04150 160 SUPERFAMILY RING/U-box 67 136 - -
Trre5g04150 160 SMART FANCL_C_2 84 143 - -
Trre5g04150 160 PANTHER RING-H2 FINGER PROTEIN ATL78 52 139 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04150 Trre-Chr5 43163733 43164926 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04150 50 138 C3H Transcription Factor Family AT3G10910 64.835 1.35e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04150 - K19040 tpra:123913418 197.978