Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04149 ATGTCACTCCGTCAACATCTCCACCGTCTTTTACTCGACACAAATTCAGCTTCAAAAACTGAATCAGGTGATCACTTCAAGTTTCTCATAAAGTTGGCGCTTATACCAGCAGCTTTAGCACTATTTTTTTTAGGACTCAGCTCAATTTTAGAGTGTATAGATTGTTTAGCATCAAATCGTTTAGAAAAAAGGGCATTGTGTAAGATACCTATAGTTGTTTATGGTTCAGGTAGTATTAGTACTAGTTTTGTAGGCACAGATTGTCCAATTTGTCTTGGGGAGTTTATGGATGGTGAGAAAGTTAGAGTATTGCCAAAATGTAACCATGGATTCCATGTAGAGTGTATAGATAAATGGTTGCTTTCACACTTCTCTTGTCCTACTTGTAGACAGTCTTTGCTTGAGTATCCAACTACCTCTGAAGCTTCATCTGAAGCTGTGATTGTTCTTGCAGTGCAGCTGTAG 465 0.3828 MSLRQHLHRLLLDTNSASKTESGDHFKFLIKLALIPAALALFFLGLSSILECIDCLASNRLEKRALCKIPIVVYGSGSISTSFVGTDCPICLGEFMDGEKVRVLPKCNHGFHVECIDKWLLSHFSCPTCRQSLLEYPTTSEASSEAVIVLAVQL 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04149 154 PANTHER RING-H2 FINGER PROTEIN ATL78 56 140 IPR044602 GO:0016567|GO:0016740
Trre5g04149 154 Pfam Ring finger domain 87 130 IPR001841 -
Trre5g04149 154 SMART ring_2 88 129 IPR001841 -
Trre5g04149 154 CDD RING-H2_EL5-like 87 130 - -
Trre5g04149 154 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Trre5g04149 154 SUPERFAMILY RING/U-box 83 137 - -
Trre5g04149 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 135 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04149 Trre-Chr5 43161696 43162160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04149 57 138 C3H Transcription Factor Family AT3G10910 66.265 7.26e-33 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04149 - K19040 tpra:123913418 201.83