Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04146 ATGTCCTCCGATGACATCAATCTCGCTCCTGACCAGAGTATCGAAAACGGCCTAACCTCCCCACTCGTCTTCCAAGACGACACACTGCGTTTCAACTGCGGCACCGCACCACAGCGACAGGTCGGTGATCCGGTTTCTAAAACCCGCGAAGTCAGCGGTTTCATTGACGACAAGATGTTCACCGTCAATCGCGATCGGTTTTTCACTTCCCAGGGTGCGGAGTTCCGCCGGAACGTTTTCGCCGATCGGTCTGACCACAGGGACAGTACAGATGTACTGAACTGGAGCGCGGGAACCCCAAGCAGCGATGATTCTGATGGGGAAGACGATGAAGATGATGACGAAGACGATGATGGAGGAGACACTGCAGCAGATAGACTCGTTAGTATCGGTAATGACGAAAGCAAACGCAATTCCAATGCAATTATTGATGTTAACAATAAAAATGGTGGCGGTGTTGCAAATGGGAAAGCTCAGCATCATTCTCCTTATGTTTCTAGTAGAGAGATATTGGGAAAGGATGGTGAAATTGTACGGTTAGTGCATAACAATGCGAGTGGCGCTACTGGTGAGGATCAACTGCGAGAAAGATTAGGTAAAACTCAGAACGCTGTGACTGTTGCTGAAACTGACTGCGAGGAGTACTATTCGCACTATCTTCAAGGTGGGGAAGGATCACCTTCTGTGCAGAAAGTTATGGTGGATGAAAATGGTTGTGGGTTTAGTGGAAGAAAGGATGCCGTGTATTCAAGCGAGTCTGGGGAGTCATTGAGGGCAATTCTTTCAGATCCTGTTACTGGAACGCTTATGGATGATGCAATGATATTACCTTGTGGACATTCATTTGGTGGAGGTGGAATTCAGCATGTTATTAGAATGAAGGCTTGTTGTACTTGTTCTCAACCCACACTGGAGGAGTCAATATCTCCAAATCTTTCACTTCGAGATGCTGTGCAGGCATACCGTCGAGAAGAAGAATCACAATTTTACCGGTCATCCAAAAGAAAAAGAGAACGATTTGATCAGGGTGGTTTTGGAGAGTGTGCTGTTGTTGAACCCTCAAGGAGTAGAGGTGTTCAATTTCCATTTGCTGTGACGGACCGGGTTATCATAAAGGGGAACAAAAGGACACCACAACGCTTTGTTGGGCGCGAAGCTATTGTAACAACACAATGTCTGAATGGATGGTATGTGGTGAAGACATTGGACAATGCAGAGAGTGTAAAATTGCAGTATCGATCCCTTGCTAAGGTTTCCGACGATCCTTCAAAACCTGTCTCCAGTAACATGGGACCTAATTGGCTTCAGATTTGCCGAACAACATCATAA 1329 0.4643 MSSDDINLAPDQSIENGLTSPLVFQDDTLRFNCGTAPQRQVGDPVSKTREVSGFIDDKMFTVNRDRFFTSQGAEFRRNVFADRSDHRDSTDVLNWSAGTPSSDDSDGEDDEDDDEDDDGGDTAADRLVSIGNDESKRNSNAIIDVNNKNGGGVANGKAQHHSPYVSSREILGKDGEIVRLVHNNASGATGEDQLRERLGKTQNAVTVAETDCEEYYSHYLQGGEGSPSVQKVMVDENGCGFSGRKDAVYSSESGESLRAILSDPVTGTLMDDAMILPCGHSFGGGGIQHVIRMKACCTCSQPTLEESISPNLSLRDAVQAYRREEESQFYRSSKRKRERFDQGGFGECAVVEPSRSRGVQFPFAVTDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDDPSKPVSSNMGPNWLQICRTTS 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04146 442 SUPERFAMILY RING/U-box 255 327 - -
Trre5g04146 442 MobiDBLite consensus disorder prediction 103 121 - -
Trre5g04146 442 ProSiteProfiles U-box domain profile. 256 328 IPR003613 GO:0004842|GO:0016567
Trre5g04146 442 MobiDBLite consensus disorder prediction 86 144 - -
Trre5g04146 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 326 IPR013083 -
Trre5g04146 442 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 6 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04146 Trre-Chr5 43137555 43143027 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04146 204 435 Plant U-box Gene Family AT5G05230 62.762 3.92e-89 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04146 - - gmx:100791099 570.852