Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04145 ATGGTTGCTCATGTGAGTGATTTTGGAATAGCAAGACTTGTCCTAGCTATTGGTGGCAGCTCTCAAAAGGATACTAGTACAATTGGAATTAAAGGGACTGTTGGTTATGCTCCTCCAGAGTACGGAATGGGTTCTGAAGTTTCCACATGTGGTGACATGTATAGCTTTGGAATCCTTGTGTTGGAAATGCTTACCGGTAGAAGACCTACTGATGAAGCTTTTGAAGATGGTCAAAATCTGCATAATTTTGTTGCAATCTCATTTCCTGACAACCTTATGAAGATTTTAGACCCACATCTCGTATCAAGAGACGTAGAAGTAGCAATACAAGATGGAAATCGTGAGAATGTTATTTCAACTATTGAAGAGTGCTTAGTTTCACTTTTTAGGATTGGTATAAATTGTTCAATGGAATCACCGAAAGAAAGAATGAATATCGCAGATGTCACTGGAGATCTTAGCAAAATCAAAAAGGCCTTTCTCAGTGGTGGTCACGCTCATAATTACCAATAA 513 0.386 MVAHVSDFGIARLVLAIGGSSQKDTSTIGIKGTVGYAPPEYGMGSEVSTCGDMYSFGILVLEMLTGRRPTDEAFEDGQNLHNFVAISFPDNLMKILDPHLVSRDVEVAIQDGNRENVISTIEECLVSLFRIGINCSMESPKERMNIADVTGDLSKIKKAFLSGGHAHNYQ 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04145 170 SUPERFAMILY Protein kinase-like (PK-like) 2 151 IPR011009 -
Trre5g04145 170 Pfam Protein tyrosine and serine/threonine kinase 2 151 IPR001245 GO:0004672|GO:0006468
Trre5g04145 170 ProSiteProfiles Protein kinase domain profile. 1 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04145 170 Gene3D Transferase(Phosphotransferase) domain 1 1 164 - -
Trre5g04145 170 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04145 Trre-Chr5 43128365 43129150 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04145 1 161 Receptor kinase-like Gene Family AT3G47580 38.272 7.92e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre5g04145 PK_Tyr_Ser-Thr 1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04145 - - mtr:11405832 264.233