Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04143 ATGTCCTCCGATGACATCAATCTCGCTCCTGACCAGAGTATCGAAAACGGCATAACCTCCCCACTCGTCTTCCAAGACGACACTCTGCGTTTCAACTGCGGCACCGCACCACAGCGACAGGTCGGTGATCCGGTTTCTAAAACCCGCGAAGTCAGCGGTTTCATTGACGACAAGATGTTCACCGTCAATCGCGATCGGTTTTTCACTTCCCAGGGTGCGGAGTTCCGCCGGAACGTTTTCGCCGATCGGTCTGATCACAGGGACAGTTCAGATGTACTGAACTGGAGCGCGGGAACCCCAAGCAGCGATGATTCTGATGGGGAAGACGATGAAGACGATGACGAAGACGATGATGGAGGAGACGCTGCAGCAGATAGACTCGTTAGTATCGGTAATGACGAAAGCAAACGCAATTCCAATGCAATTATTGATGTTAACAATAACAATGGTGGCGGTGTTGCAAATGGGAAAGCTCAGCATCATTCTCCATATGTTTCTAGTAGAGAGATATTGGGAAAGGATGGTGAAATTGTACGGTTAGTGCATAACAATGCGAGTGGCGTTACCGGTGAGGATCAACTGCGAGAAAGATTAGGTAAAACTCAGAACTCTGTGACTGTTGCTGAAACTGACTGCGAGGAGTACTATTCGCACTATCTTCAAGGTGGGGAAGGATCACCTTCTGTGCAGAAAGTTATGGTGGATGAAAATGGTTGTGGGTTTAGTGGAAGAAAGGATGCCGTGTATTCAAGCGAGTCTGGGGAGTCATTGAGGGCAATTCTTTCAGATCCTGTTACTGGAACGCTTATGGATGATGCAATGATATTACCTTGTGGACATTCATTTGGTGGAGGTGGAATTCAGCATGTTATTAGAATGACTGTTGTGAATGATTGTGGAGTGTGTGAGAAGAAGTACTCAAACACTCTCTTATTAAGTTTGTGA 945 0.4688 MSSDDINLAPDQSIENGITSPLVFQDDTLRFNCGTAPQRQVGDPVSKTREVSGFIDDKMFTVNRDRFFTSQGAEFRRNVFADRSDHRDSSDVLNWSAGTPSSDDSDGEDDEDDDEDDDGGDAAADRLVSIGNDESKRNSNAIIDVNNNNGGGVANGKAQHHSPYVSSREILGKDGEIVRLVHNNASGVTGEDQLRERLGKTQNSVTVAETDCEEYYSHYLQGGEGSPSVQKVMVDENGCGFSGRKDAVYSSESGESLRAILSDPVTGTLMDDAMILPCGHSFGGGGIQHVIRMTVVNDCGVCEKKYSNTLLLSL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04143 314 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 21 309 - -
Trre5g04143 314 MobiDBLite consensus disorder prediction 103 121 - -
Trre5g04143 314 SUPERFAMILY RING/U-box 257 307 - -
Trre5g04143 314 ProSiteProfiles U-box domain profile. 256 314 IPR003613 GO:0004842|GO:0016567
Trre5g04143 314 MobiDBLite consensus disorder prediction 86 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04143 Trre-Chr5 43112530 43114874 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04143 204 307 Plant U-box Gene Family AT5G05230 47.222 1.62e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04143 - - pcin:129302449 321.242