Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04142 ATGTCCTCCGATGACATCAATCTCGCTCCTGACCAGAGTATCGAAAACGGCATAACCTCCCCACTCGTCTTCCAAGACGACACTCTGCGTTTCAACTGCGGCACCGCACCACAGCGACAGGTCGGTGATCCGGTTTCTAAAACCCGCGAAGTCAGCGGTTTCATTGACGACAAGATGTTCACCGTCAATCGCGATCGGTTTTTCACTTCCCAGGGTGCGGAGTTCCGCCGGAACGTTTTCGCCGATCGGTCTGATCACAGGGACAGTTCAGATGTACTGAACTGGAGCGCGGGAACCCCAAGCAGCGATGATTCTGATGGGGAAGACGATGAAGACGATGACGAAGACGATGATGGAGGAGACGCTGCAGCAGATAGACTCGTTAGTATCGGTAATGACGAAAGCAAACGCAATTCCAATGCAATTATTGATGTTAACAATAACAATGGTGGCGGTGTTGCAAATGGGAAAGCTCAGCATCATTCTCCATATGTTTCTAGTAGAGAGATATTGGGAAAGGATGGTGAAATTGTACGGTTAGTGCATAACAATGCGAGTGGCGTTACCGGTGAGGATCAACTGCGAGAAAGATTAGGTAAAACTCAGAACTCTGTGACTGTTGCTGAAACTGACTGCGAGGAGTACTATTCGCACTATCTTCAAGGTGGGGAAGGATCACCTTCTGTGCAGAAAGTTATGGTGGATGAAAATGGTTGTGGGTTTAGTGGAAGAAAGGATGCCGTGTATTCAAGCGAGTCTGGGGAGTCATTGAGGGCAATTCTTTCAGATCCTGTTACTGGAACGCTTATGGATGATGCAATGATATTACCTTGTGGACATTCATTTGGTGGAGGTGGAATTCAGCATGTTATTAGAATGAGTTTAAGAAGAAGATGGATTTTGGAGCAAAATAGGTTTGGCTTATTGTTCCTCTTATTGCTGACATTGTTGCAATTGTCGTTTCTTCCAAAACTTCTTCCCAGATTTCTCTCTTTGGAGTCATTGACAAAGCTTGTCAGTGTACCCGAGTATTTAATCTCACTCCAGTCTTTAGATCCATGCATACAAGGTGTTCTTTGTTTTTTGCATTTATTTAATCTTGAATTGTGGAATTCCGAATCTCAATGTATTGTGTAG 1137 0.4494 MSSDDINLAPDQSIENGITSPLVFQDDTLRFNCGTAPQRQVGDPVSKTREVSGFIDDKMFTVNRDRFFTSQGAEFRRNVFADRSDHRDSSDVLNWSAGTPSSDDSDGEDDEDDDEDDDGGDAAADRLVSIGNDESKRNSNAIIDVNNNNGGGVANGKAQHHSPYVSSREILGKDGEIVRLVHNNASGVTGEDQLRERLGKTQNSVTVAETDCEEYYSHYLQGGEGSPSVQKVMVDENGCGFSGRKDAVYSSESGESLRAILSDPVTGTLMDDAMILPCGHSFGGGGIQHVIRMSLRRRWILEQNRFGLLFLLLLTLLQLSFLPKLLPRFLSLESLTKLVSVPEYLISLQSLDPCIQGVLCFLHLFNLELWNSESQCIV 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04142 378 MobiDBLite consensus disorder prediction 103 121 - -
Trre5g04142 378 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 21 294 - -
Trre5g04142 378 MobiDBLite consensus disorder prediction 86 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04142 Trre-Chr5 43112530 43115148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04142 204 293 Plant U-box Gene Family AT5G05230 51.064 1.70e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04142 - - pcin:129302449 319.316