Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04141 ATGAGAGTTATGAGAGTGCTTTTTGTGTGCTTGTTCTTGCTGTTTCTGGTGACTGTGACAGCTGTGAATCCGTCTCTAAACGATGACGTTTTGGGGTTGATTGTGTTCAAAGCGGATATACAAGATCCAAAAGGAAAGTTAGCATCTTGGAATGAAGATGATGAAAGTGCTTGTGGTGGTAGTTGGGTTGGAGTGAAATGTAACCCTAGATCCAATAGGGTTGTGGAGGTTAACCTTAATGGGTTTTCTTTATCTGGAAGAATTGGTCGTGGTTTACAACGTTTGCAATTTCTTCGTAGGCTTTATTTGGCGAATAATAATCTTACTGGGACTATAACCCCTAATATTGCTACTATTGATAACCTTAGGGTTCTTGATTTGAGCAATAATAATCTTTCAGGGGTTGTTCCTGATGATTTTTTTCGACAATGTGGGTCTATGAGAGTTGTTTCTTTGGCGGGGAACATGTTTTCAGGGAATGTTCCTTCAAGTATAGGTTCATGTTCAGCTATTGCTAGTATAGATTTGTCTGCTAACCAGTTTTCTGGTTCTGTTCCTAAGGAGATTTGGACTTTGAGTGGACTTAGGTCTCTTGATTTGTCTGATAATTTGTTGGAAGGAGAGGTTCCTGAAGGAGTTGAGGCGTTGAAGAATTTGCGGAGCATTAACTTGGCGAGAAATAGCTTTTCTGGGAAGATACCAGATGGGTTTGGAAGTTGTTTGCTTTTGAGGTCTATTGATTTTGGTGATAATTCTTTCTCTGGTAACATACCTAATTATTTGAAGGAGTTGGTGTTGTGTAGTTACTTTAGTTTGAGTGGAAATGCTTTCTCAGGAGATGTTCCCGAGTGGATTGGAGATTTGAAGGGTCTTCAGACATTGGATCTTTCTCGGAATAGATTTTCTGGTATGGTACCTAACTCTTTAGGAAATCTTTGGTCATTGAAAACATTGAATCTTTCTGGAAATGGTTTCACTGGTAATCTTCCCGAGTCTATGGCGAACTGCACAAACCTCTTGGACTTGGATGTTAGCCTAAATTCATTGTCTGGAGATCTTCCATCGTGGATTTTCAAGTCGGATTTGGTAGGTGAAAACAAAATGAGTGGCAGGGCGAAAAGCTCTTTGTATTCCCTGACTGAAGTTGCTGTTCAGAGTCTTCAAGTGTTGGATTTATCTCGCAATGCATTTTCCGGTGAAATCACTTCTGCTATTTCGGGTTTAAGCAGCTTGCAAGTTTTGAATTTATCATATAACTCTCTGACAGGCCATGTTCCGTCTGCAATTGGTGGTTTAAAAACATGTTCTAGTCTTGATTTGAGTAATAATAAGCTAAATGGAAGTATACCTCTGGAAATTGGTGGAGCTGTTTCCTTGAAAGAGCTGAATTTGGAAAACAACATCCTTATTGGGAAAATTCCAATCTCAATCGAGAACTGCTCTTCATTAACAACATTGATTCTGTCGAAGAACAAGCTGAGTGGGCCGATACCTGCAGCAGTTGCAAAACTCACCAACCTGAAAACTGTGGACATATCATTCAACAACCTTACTGGAAATCTTCCCAAGCAATTGGCCAATCTTCCCAATCTCGTGACCTTCAATTTATCTCACAACAACCTTGAGGGTGAACTACCGGCTGGTGGTTTCTTCAACACCATTTCGCCGTCCTCCGTTTCTGGCAATCCATTTATTTGTGGCTCTGTTGTGAACACAAAGTGCCCTGTTAAACTCCCAAAGCCTATTGTTCTGAATCCCAACCTTTCTCCTGATGCTGACACTGGTTTGCCTACTCCAACGTTAGGTCACAAAAGAAATATCCTCAGCATTTCAGCACTCATTGCCATTGGTGCAGCTGCTTTCATTGTAATTGGTGTGATTGGAATAACTGTTCTCAACCTCCGTGTTCGGTCCACCGCATCTCGATCTCCAGCTGCTCTTGCTTTTTCTGCAGGGGACGAGTTCAGCCGTTCGCCCACAACAGATGCAAACTCCGGCAAACTTGTCATGTTTTCAGGTGAGCCTGATTTCAGCTCTGGTGCTCACGCCTTGCTGAACAAGGATTGCGAGCTGGGGCGTGGAGGGTTCGGAGCTGTGTACCAAACAGTTCTTGGAGACGGGCGTTCGGTTGCTATAAAGAAGCTCACCGTGTCGAGCCTCGTCAAGTCTCAAGATGATTTCGAGAGGGAAGTGAAGAAATTAGGGAAAGTCAGACACCAAAACCTCGTTGAACTCGAAGGCTATTATTGGACTTCATCGCTACAACTCCTCATATACGAGTTTGTCTCCCGTGGCAGCCTTTACAAGCATCTCCACGAAGGATCAGGTGAAAACTTCCTCTCGTGGAATGAGAGGTTCAATGTCATTCTCGGTACTGCCAAGGCCTTATCTCACTTGCACCACTCCAACATCATTCACTACAACATCAAGTCAACCAACGTCCTTATCGATAGCTACGGTGAACCTAAAGTAGGGGATTACGGCCTAGCAAGGCTGCTACCAATGCTCGACCGCTACGTCTTGAGCAGCAAAATTCAGAGCGCACTCGGCTACATGGCACCAGAATTCGCCTGCAAGACAGTAAAAATCACCGAAAAGTGCGATGTTTATGGATTCGGAGTATTGGTTTTGGAGATTGTGACAGGTAAGAGGCCAGTAGAGTACATGGAGGATGACGTGGTTGTACTTTGTGACATGGTTAGAGGAGCATTGGACGAAGGGAGAGTAGAGGAATGCATCGATGAGAGACTTCAAGGGAAGTTTCCAGTGGAGGAAGTGATTCCTGTGATTAAGCTTGGTCTGGTATGTACTTCACAAGTACCATCAAATAGGCCAGAAATGGGAGAGGTAGTTACCATATTGGAACTTATAAGATGCCCCTCAGGTTCAGATGGACAAGAAGAGTTATTGGGATGA 2916 0.4331 MRVMRVLFVCLFLLFLVTVTAVNPSLNDDVLGLIVFKADIQDPKGKLASWNEDDESACGGSWVGVKCNPRSNRVVEVNLNGFSLSGRIGRGLQRLQFLRRLYLANNNLTGTITPNIATIDNLRVLDLSNNNLSGVVPDDFFRQCGSMRVVSLAGNMFSGNVPSSIGSCSAIASIDLSANQFSGSVPKEIWTLSGLRSLDLSDNLLEGEVPEGVEALKNLRSINLARNSFSGKIPDGFGSCLLLRSIDFGDNSFSGNIPNYLKELVLCSYFSLSGNAFSGDVPEWIGDLKGLQTLDLSRNRFSGMVPNSLGNLWSLKTLNLSGNGFTGNLPESMANCTNLLDLDVSLNSLSGDLPSWIFKSDLVGENKMSGRAKSSLYSLTEVAVQSLQVLDLSRNAFSGEITSAISGLSSLQVLNLSYNSLTGHVPSAIGGLKTCSSLDLSNNKLNGSIPLEIGGAVSLKELNLENNILIGKIPISIENCSSLTTLILSKNKLSGPIPAAVAKLTNLKTVDISFNNLTGNLPKQLANLPNLVTFNLSHNNLEGELPAGGFFNTISPSSVSGNPFICGSVVNTKCPVKLPKPIVLNPNLSPDADTGLPTPTLGHKRNILSISALIAIGAAAFIVIGVIGITVLNLRVRSTASRSPAALAFSAGDEFSRSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLGDGRSVAIKKLTVSSLVKSQDDFEREVKKLGKVRHQNLVELEGYYWTSSLQLLIYEFVSRGSLYKHLHEGSGENFLSWNERFNVILGTAKALSHLHHSNIIHYNIKSTNVLIDSYGEPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALDEGRVEECIDERLQGKFPVEEVIPVIKLGLVCTSQVPSNRPEMGEVVTILELIRCPSGSDGQEELLG 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04141 971 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524
Trre5g04141 971 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 679 761 - -
Trre5g04141 971 Pfam Leucine rich repeat N-terminal domain 27 68 IPR013210 -
Trre5g04141 971 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 27 307 - -
Trre5g04141 971 SUPERFAMILY L domain-like 26 357 - -
Trre5g04141 971 PRINTS Leucine-rich repeat signature 408 421 - -
Trre5g04141 971 PRINTS Leucine-rich repeat signature 122 135 - -
Trre5g04141 971 Pfam Protein tyrosine and serine/threonine kinase 687 952 IPR001245 GO:0004672|GO:0006468
Trre5g04141 971 Gene3D Ribonuclease Inhibitor 216 264 IPR032675 -
Trre5g04141 971 Gene3D Ribonuclease Inhibitor 265 307 IPR032675 -
Trre5g04141 971 Gene3D Ribonuclease Inhibitor 30 140 IPR032675 -
Trre5g04141 971 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 308 578 - -
Trre5g04141 971 Pfam Leucine rich repeat 98 155 IPR001611 GO:0005515
Trre5g04141 971 Pfam Leucine rich repeat 386 445 IPR001611 GO:0005515
Trre5g04141 971 Pfam Leucine rich repeat 482 541 IPR001611 GO:0005515
Trre5g04141 971 Pfam Leucine rich repeat 271 324 IPR001611 GO:0005515
Trre5g04141 971 SUPERFAMILY Protein kinase-like (PK-like) 688 957 IPR011009 -
Trre5g04141 971 Gene3D Ribonuclease Inhibitor 141 215 IPR032675 -
Trre5g04141 971 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 762 963 - -
Trre5g04141 971 ProSiteProfiles Leucine-rich repeat profile. 121 142 IPR001611 GO:0005515
Trre5g04141 971 Gene3D Transferase(Phosphotransferase) domain 1 762 965 - -
Trre5g04141 971 Pfam Leucine Rich Repeat 458 480 IPR001611 GO:0005515
Trre5g04141 971 Pfam Leucine Rich Repeat 218 240 IPR001611 GO:0005515
Trre5g04141 971 ProSiteProfiles Protein kinase domain profile. 685 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04141 971 Gene3D Ribonuclease Inhibitor 308 578 IPR032675 -
Trre5g04141 971 CDD STKc_IRAK 691 957 - -
Trre5g04141 971 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 243 359 IPR046959 -
Trre5g04141 971 Gene3D Phosphorylase Kinase; domain 1 679 761 - -
Trre5g04141 971 SMART LRR_typ_2 216 240 IPR003591 -
Trre5g04141 971 SMART LRR_typ_2 288 311 IPR003591 -
Trre5g04141 971 SMART LRR_typ_2 312 336 IPR003591 -
Trre5g04141 971 SMART LRR_typ_2 528 552 IPR003591 -
Trre5g04141 971 SMART LRR_typ_2 119 142 IPR003591 -
Trre5g04141 971 SMART LRR_typ_2 95 118 IPR003591 -
Trre5g04141 971 SMART LRR_typ_2 408 432 IPR003591 -
Trre5g04141 971 SMART LRR_typ_2 504 527 IPR003591 -
Trre5g04141 971 SMART LRR_typ_2 192 215 IPR003591 -
Trre5g04141 971 SUPERFAMILY L domain-like 258 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04141 Trre-Chr5 43083961 43087640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04141 6 966 Receptor kinase-like Gene Family AT3G56370 67.461 0.0 1260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Trre5g04141 PK_Tyr_Ser-Thr 3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04141 - - mtr:25489825 1670.21