Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04138 ATGGCTTCTGGTTCTTCTTCTTCAAATTGGGTGATGGAAAGTGGTGACATTCCTCATGTTCTAGCTGTTGATGATTCTCTTGTTGATCGAAAACTTGTTGAGAAACTTCTAAGGAATTCCTCTTGCAAAGTTACAACTGCTGAAAATGGGCCTAAGGCATTGGAGTTATTGGGCTTGTCAAGTGGTGGACAAAACACCTTGAATGGGAGATCCAAAGTAAATTTAGTTATCACAGACTATTGCATGCCAGGAATGACTGGCTATGAGTTACTTAAGAAAATTAAGCAATCATCTGTAATGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACAAGGGTCAACAAGTGTCTAGAAGAAGGAGCTCAGATGTTCATACTAAAGCCCCTCAAACAATCTGATGTAAAACAATTGACATGTCAGTTAATGAATTTGGGAAGGTGA 453 0.3929 MASGSSSSNWVMESGDIPHVLAVDDSLVDRKLVEKLLRNSSCKVTTAENGPKALELLGLSSGGQNTLNGRSKVNLVITDYCMPGMTGYELLKKIKQSSVMKEVPVVIMSSENIPTRVNKCLEEGAQMFILKPLKQSDVKQLTCQLMNLGR 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04138 150 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 145 IPR045279 GO:0009736
Trre5g04138 150 SMART REC_2 18 142 IPR001789 GO:0000160
Trre5g04138 150 SUPERFAMILY CheY-like 18 147 IPR011006 -
Trre5g04138 150 CDD REC_typeA_ARR 20 141 - -
Trre5g04138 150 Gene3D - 19 150 - -
Trre5g04138 150 Pfam Response regulator receiver domain 20 140 IPR001789 GO:0000160
Trre5g04138 150 ProSiteProfiles Response regulatory domain profile. 19 146 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04138 Trre-Chr5 43015674 43017246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04138 2 147 Response Regulator Gene Family AT3G56380 66.892 1.14e-61 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre5g04138 Response_reg 1.3e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04138 K14492 - gmx:100778707 271.937