Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04136 ATGAAGGAGTTACTCATAAAAGAACTTATTCAGGGTAAAGAATATGCTAATCAACTCAAGTTTATGCTTAACAATCATGTTGAATCTGATGGGTCTGTTTCTGTTAAGGAATTAGTTACCAATGTGTTGAGAACTTTCTCTGAGACTATTTCTGTGATGAATTCTTCTGAAGCTTGTAATTTTGATGAAGTTGCTCAGAATCATCTTGTGAATAATAATAATAATTCAGGGGAAGATGGTTCATTAGTTGCAGCTTCTTGTAATGATGATGTTAAATCTGAAGATTCAAATGAGAGTAAGAAAAGATTGTTACCTACTACTACAAAGGATCGAAGAGGTTCCTACAAAAGAAGGAAGACTGATGAGACAAGGACTCTAGTCTCTAAAACAATTGGTGACAATCATTCTTGGAGAAAGTATGGACAGAAAGAAATCCTTAATTCTCAATTCCCAAGGAGTTACTTCAGATGTACTAGAAAGCATGATCAAGGTTGCAAAGCAACCAAACAGGTACAATTGATAGAAGAGAATCCAGAAATGTACCAAATTACATACATCGGCTTTCATACATGCAAAGCCTCTTTACAGACTCCACAAATGGTCGCATTTTCTGCCGATACTAATTGGGACTCATTTCCTGTGAATCCTCATCATAACTCAAAGGAAATTGTAGTACACCAGGATTCTCCTATTATTACCTCAGAAAGGCCAATTGTGAAACAAGAATATCCGAACAACGACGATAATACTACTCAGAGAAGTGATCTTACAGATAACTTATTGGATGATCAAAATTTGTGGTCTGATTTTAAGGATTTTGAACTCTCCAAACCTGCTGCTACTTTAAGCTTTAATAACGTGGCGCCGTCTGATAATAATAATAATAATGCAGATAATGTGTATTCATGTACTGAATCTCAAAATCTTGAAATTGATTTTGGGTTGTTTCCAGATTTCAGCAATGATTTAGTATATTTTGATGAAAGTAATTTACTTTAG 999 0.3443 MKELLIKELIQGKEYANQLKFMLNNHVESDGSVSVKELVTNVLRTFSETISVMNSSEACNFDEVAQNHLVNNNNNSGEDGSLVAASCNDDVKSEDSNESKKRLLPTTTKDRRGSYKRRKTDETRTLVSKTIGDNHSWRKYGQKEILNSQFPRSYFRCTRKHDQGCKATKQVQLIEENPEMYQITYIGFHTCKASLQTPQMVAFSADTNWDSFPVNPHHNSKEIVVHQDSPIITSERPIVKQEYPNNDDNTTQRSDLTDNLLDDQNLWSDFKDFELSKPAATLSFNNVAPSDNNNNNADNVYSCTESQNLEIDFGLFPDFSNDLVYFDESNLL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04136 332 SUPERFAMILY WRKY DNA-binding domain 129 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g04136 332 SMART WRKY_cls 131 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g04136 332 ProSiteProfiles WRKY domain profile. 133 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g04136 332 MobiDBLite consensus disorder prediction 91 122 - -
Trre5g04136 332 MobiDBLite consensus disorder prediction 88 122 - -
Trre5g04136 332 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 9 212 IPR044810 GO:0003700
Trre5g04136 332 MobiDBLite consensus disorder prediction 239 256 - -
Trre5g04136 332 Pfam WRKY DNA -binding domain 133 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g04136 332 MobiDBLite consensus disorder prediction 234 256 - -
Trre5g04136 332 Gene3D WRKY domain 118 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04136 Trre-Chr5 43003871 43007404 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04136 5 199 WRKY Transcription Factor Family AT3G56400 44.615 3.70e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre5g04136 WRKY 1.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04136 - - tpra:123913408 522.702