Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04135 ATGAGTATTATTTTACATGATGAAAGTGCTTCTTCAAAGATGAAGGAGTTACTCATAAAAGAACTTATTCAGGGTAAAGAATATGCTAATCAACTCAAGTTTATGCTTAACAATCATGTTGAATCTGATGGGTCTGTTTCTGTTAAGGAATTAGTTACCAATGTGTTGAGAACTTTCTCTGAGACTATTTCTGTGATGAATTCTTCTGAAGCTTGTAATTTTGATGAAGTTGCTCAGAATCATCTTGTGAATAATAATAATAATTCAGGGGAAGATGGTTCATTAGTTGCAGCTTCTTGTAATGATGATGTTAAATCTGAAGATTCAAATGAGAGTAAGAAAAGATTGTTACCTACTACTACAAAGGATCGAAGAGGTTCCTACAAAAGAAGGAAGACTGATGAGACAAGGACTCTAGTCTCTAAAACAATTGGTGACAATCATTCTTGGAGAAAGTATGGACAGAAAGAAATCCTTAATTCTCAATTCCCAAGGAGTTACTTCAGATGTACTAGAAAGCATGATCAAGGTTGCAAAGCAACCAAACAGGTACAATTGATAGAAGAGAATCCAGAAATGTACCAAATTACATACATCGGCTTTCATACATGCAAAGCCTCTTTACAGACTCCACAAATGGTCGCATTTTCTGCCGATACTAATTGGGACTCATTTCCTGTGAATCCTCATCATAACTCAAAGGAAATTGTAGTACACCAGGATTCTCCTATTATTACCTCAGAAAGGCCAATTGTGAAACAAGAATATCCGAACAACGACGATAATACTACTCAGAGAAGTGATCTTACAGATAACTTATTGGATGATCAAAATTTGTGGTCTGATTTTAAGGATTTTGAACTCTCCAAACCTGCTGCTACTTTAAGCTTTAATAACGTGGCGCCGTCTGATAATAATAATAATAATGCAGATAATGTGTATTCATGTACTGAATCTCAAAATCTTGAAATTGATTTTGGGTTGTTTCCAGATTTCAGCAATGATTTAGTATATTTTGATGAAAGTAATTTACTTTAG 1038 0.342 MSIILHDESASSKMKELLIKELIQGKEYANQLKFMLNNHVESDGSVSVKELVTNVLRTFSETISVMNSSEACNFDEVAQNHLVNNNNNSGEDGSLVAASCNDDVKSEDSNESKKRLLPTTTKDRRGSYKRRKTDETRTLVSKTIGDNHSWRKYGQKEILNSQFPRSYFRCTRKHDQGCKATKQVQLIEENPEMYQITYIGFHTCKASLQTPQMVAFSADTNWDSFPVNPHHNSKEIVVHQDSPIITSERPIVKQEYPNNDDNTTQRSDLTDNLLDDQNLWSDFKDFELSKPAATLSFNNVAPSDNNNNNADNVYSCTESQNLEIDFGLFPDFSNDLVYFDESNLL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04135 345 ProSiteProfiles WRKY domain profile. 146 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g04135 345 Pfam WRKY DNA -binding domain 146 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g04135 345 Gene3D WRKY domain 131 207 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g04135 345 MobiDBLite consensus disorder prediction 247 269 - -
Trre5g04135 345 SUPERFAMILY WRKY DNA-binding domain 142 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g04135 345 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 22 225 IPR044810 GO:0003700
Trre5g04135 345 MobiDBLite consensus disorder prediction 252 269 - -
Trre5g04135 345 MobiDBLite consensus disorder prediction 101 134 - -
Trre5g04135 345 MobiDBLite consensus disorder prediction 104 134 - -
Trre5g04135 345 SMART WRKY_cls 144 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04135 Trre-Chr5 43003832 43007404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04135 13 212 WRKY Transcription Factor Family AT3G56400 44.776 2.56e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre5g04135 WRKY 1.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04135 - - tpra:123913408 538.88