Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04115 ATGAAGTTGCAATTCTCAATTGTTGTTGCTCTCGCTCTATTAATTTCTCCGCTCTCTCTCTTTGGCTTGATTGTTGCCGCTGCTGACTTGAACTCCGACCGGCAAGCTCTATTGGAGTTTGCTTCTGCTGTCCCGCACGCTCCAAGGCTAAACTGGAACAACTCTTCTTCAATTTGTGCCTCATGGATTGGCGTTACTTGCAATTCAAACGGAACACGTGTCATAGGTATCCATCTTCCAGGAATCGGATTAACCGGATCGATTCCTGAGAATACTATAGGAAAACTAGATGCTCTTAGAGTTCTAAGCCTTCATTCCAATGGTCTTGTAGGGGATCTTCCTTCTAACATCCTCTCAATTCCATCACTTCAATTTGCACACCTGCAGAAAAATAATTTCTCAGGTCTAATTCCTTCTTCGGTCTCTCCGAAACTAACATCATTGGATATTTCCTTTAACTCCTTCTCTGGAAGTATACCACCTACATATCAGAATCTGAGAAGACTCACTTGGTTGTATATCCAAAACAATTCTATATCCGGAACTATCCCCGACTTCAACCTTCCAAGTCTCAAATACTTGAATTTGAGCAATAATAACTTGAATGGATCAATTCCAAATTCCATCAAAACATTCCCTTCTACTTCTTTTGTTGGAAACTCTCTCTTATGTGGTCCACCTCTTCTCAAAGATTGCTCTTCAATCTCTCCTTCTCCATCTCCTTCTCCTGATTCCACACAAAACCAAAAAGCTAAGACCCCCCATAAGAAAAGCTTTGGCATAGCTTCTATACTTGCTCTAGTCATTGGAGGAATTGCATTCCTCTCTCTACTAGTTTTAGTGTTCTTTGTATGCTTCTACAAAAAGAAAAACAATAAAAGAAGTGGCATACTTAAAGGAAAGGCTTCTTCTTGTGCTGGAAAGGCCGAAGTTTCGAAGAGTTTCGGGAGTGGAGTACAAGCTGCTGAAAAGAACAAGTTGTTTTTCTTTGAAGGTTCTTCTTATACCTTTGACCTTGAGGATTTACTAAAGGCTTCCGCTGAAGTTCTTGGAAAAGGGAGCTATGGTACAGCATACAAGGCTGTTTTGGAGGAAGGAGTGACAATGGTAGTTAAAAGGTTGAAGGAAGTTGTGGTTGGAAAGAAGGAATTTGAGCAACAGTTGGATATTGTTGGGAGAATCGGACGCCATCCCAATGTCATGCCCCTTCGAGCTTATTACTATTCCAAAGATGAGAAACTTTTGGTTTACAGTTACATGCCAGGAGGCAGCTTGTTTTTCTTGTTGCATGGAAACAAAGGTGCAGGAAGAACACCATTTGATTGGGATTCAAGAGTGAAGATTGCACTTGGAACTGCTAAAGGAATTGCTTTCATTCACACTGAAGGAGGTCCAAAATTTACACATGGAAACATCAAATCAACCAATGTACTAATAACAGAAGAATTTGATAGCTGCATTTCTGATGTTGGTTTACCTCCTTTGATGAATGCACCAGCAACAATGTCTAGAACAAATGGATATAGAGCTCCAGAAGTAACTGATTCCAAAAAGATCACACAAAAATCTGATGTATACAGCTTCGGCGTGCTACTACTCGAAATGCTAACAGGCAAGATTCCACTGAGATATCCTGGTTATGAAGATGTTGTTGATCTTCCAAGATGGGTTAGGTCTGTTGTGAGAGAGGAATGGACTGCTGAAGTATTTGATGAGGAACTTCTTCAAGGACAATATGTTGAAGAGGAAATGGTGCAAATGCTTCAGATTGCACTTGCATGTGTGGCTAAGACGCCGGATACGAGGCCTAGAATGGATGAAGCTGTTAAAATGATTGAGGAAATTAAACATCCTGAGTTTAAGATCAGGACATCCTCCGAGTCCGAATACTCCAATGTGCAGACACCATAA 1911 0.4082 MKLQFSIVVALALLISPLSLFGLIVAAADLNSDRQALLEFASAVPHAPRLNWNNSSSICASWIGVTCNSNGTRVIGIHLPGIGLTGSIPENTIGKLDALRVLSLHSNGLVGDLPSNILSIPSLQFAHLQKNNFSGLIPSSVSPKLTSLDISFNSFSGSIPPTYQNLRRLTWLYIQNNSISGTIPDFNLPSLKYLNLSNNNLNGSIPNSIKTFPSTSFVGNSLLCGPPLLKDCSSISPSPSPSPDSTQNQKAKTPHKKSFGIASILALVIGGIAFLSLLVLVFFVCFYKKKNNKRSGILKGKASSCAGKAEVSKSFGSGVQAAEKNKLFFFEGSSYTFDLEDLLKASAEVLGKGSYGTAYKAVLEEGVTMVVKRLKEVVVGKKEFEQQLDIVGRIGRHPNVMPLRAYYYSKDEKLLVYSYMPGGSLFFLLHGNKGAGRTPFDWDSRVKIALGTAKGIAFIHTEGGPKFTHGNIKSTNVLITEEFDSCISDVGLPPLMNAPATMSRTNGYRAPEVTDSKKITQKSDVYSFGVLLLEMLTGKIPLRYPGYEDVVDLPRWVRSVVREEWTAEVFDEELLQGQYVEEEMVQMLQIALACVAKTPDTRPRMDEAVKMIEEIKHPEFKIRTSSESEYSNVQTP 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04115 636 Gene3D Phosphorylase Kinase; domain 1 309 419 - -
Trre5g04115 636 PRINTS Leucine-rich repeat signature 145 158 - -
Trre5g04115 636 PRINTS Leucine-rich repeat signature 188 201 - -
Trre5g04115 636 ProSiteProfiles Protein kinase domain profile. 344 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04115 636 PANTHER OS05G0588300 PROTEIN 14 626 - -
Trre5g04115 636 FunFam Leucine-rich repeat receptor-like protein kinase 143 232 - -
Trre5g04115 636 Pfam Protein kinase domain 348 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04115 636 FunFam pollen receptor-like kinase 1 312 419 - -
Trre5g04115 636 Gene3D Ribonuclease Inhibitor 143 234 IPR032675 -
Trre5g04115 636 Pfam Leucine Rich Repeat 144 166 IPR001611 GO:0005515
Trre5g04115 636 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Trre5g04115 636 SUPERFAMILY L domain-like 35 228 - -
Trre5g04115 636 Gene3D Transferase(Phosphotransferase) domain 1 420 634 - -
Trre5g04115 636 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 420 626 - -
Trre5g04115 636 Pfam Leucine Rich repeats (2 copies) 168 206 IPR025875 -
Trre5g04115 636 CDD STKc_IRAK 350 615 - -
Trre5g04115 636 ProSitePatterns Protein kinases ATP-binding region signature. 350 381 IPR017441 GO:0005524
Trre5g04115 636 Gene3D Ribonuclease Inhibitor 31 142 IPR032675 -
Trre5g04115 636 SUPERFAMILY Protein kinase-like (PK-like) 348 615 IPR011009 -
Trre5g04115 636 ProSiteProfiles Leucine-rich repeat profile. 190 212 IPR001611 GO:0005515
Trre5g04115 636 FunFam Leucine-rich repeat receptor-like protein kinase 32 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04115 Trre-Chr5 42817815 42820133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04115 26 616 Receptor kinase-like Gene Family AT5G58300 60.504 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre5g04115 Pkinase 1.2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04115 - - aprc:113868460 1008.82