Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04112 ATGATTCCTCGAACTCGTTCTCGTTTTCGTGCTAGTTCTGAGGAAGAGAACAGTTCTTCGAGGGATCGGGTTGAGGAATTGAGCTGCAATGAGGTCATTGGTGGTGGTGGTGGTGGTGGTGGTATGACGTTTTCCGAGGAGGCTCGTCGTGCTATGGCTGAGGAAAGAGTTCCTCTTGTGTCTTTGGCTGATGTTGTCGGTGGTGGTACGGATAGTTCTTATAACCATCCAAGGATTGATTTTCAATACATTGCTAAACTTGTTGAACAGATTCTTCCTTTTTCTTTGTTGTTGTTGATTGTTTTGATCAGACAACATTTTCAAGGTTTCTTTGTTACAATCAGTTTATCAGCTGTGATGTTCAAGTCGAATGAACTTGTTAAGAAACAGACTGCTCTAAAGGGAGATCAGAAAGTTTCTGTTCTTCTCGGTGTCTCTTTTTCCTTCATGCTGTATGTGATCTGCATTTACTGGTGGTATCAAAATGATGATATTCTATATCCTCTGGCCATGTTTCCGCCAGAATCAACACCGCCTTTCTGGCATGCAATATTCATCATTTTGGTTAATGATATATTGGTGCGGCAAGCGGCAATGGCTTTCAAGTGTTTGTTGCTGGTTTACTACAAAAATAGCAGATGCCATAATTTCCGTCGACAGGCTCAAATGTTAACTCTAGTTGAGTACACACTGCTGCTGTACCGCGCTTTCTTGCCAGCACCTGTTTGGTACCGATTTTTCTTTAACAAGGACTTTGGAAGTCTCTTCTCATCACTGATCACAGGATTGTATCTAACGTTCAAGCTAACATCTTCAGTTGAGAAGATCCAGTGCTTAATTTGTGCTTTACAAGCGTTGTCAAAAAAGGAAGTTCATTATGGGGTTTATGCCACAACAGAACAGGTAAATGCTGCTGGTGATCTGTGCGCTATATGCCAAGAGAAGATGCATGCTCCTATCCTGTTGTGCTGTAACCATATGTTCTGCGAGGAATGTGTATCCGAATGGTTTGAGAGAGAATGGACTTGCCCGTTATGCAGGACATTGGTAAAACCTTCTGATCTGCGGACCTTCGGAGATGGATCAACAAGTTTGTTTTATCAGTTGTTTTGA 1113 0.4214 MIPRTRSRFRASSEEENSSSRDRVEELSCNEVIGGGGGGGGMTFSEEARRAMAEERVPLVSLADVVGGGTDSSYNHPRIDFQYIAKLVEQILPFSLLLLIVLIRQHFQGFFVTISLSAVMFKSNELVKKQTALKGDQKVSVLLGVSFSFMLYVICIYWWYQNDDILYPLAMFPPESTPPFWHAIFIILVNDILVRQAAMAFKCLLLVYYKNSRCHNFRRQAQMLTLVEYTLLLYRAFLPAPVWYRFFFNKDFGSLFSSLITGLYLTFKLTSSVEKIQCLICALQALSKKEVHYGVYATTEQVNAAGDLCAICQEKMHAPILLCCNHMFCEECVSEWFEREWTCPLCRTLVKPSDLRTFGDGSTSLFYQLF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04112 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 357 IPR013083 -
Trre5g04112 370 SMART ring_2 309 346 IPR001841 -
Trre5g04112 370 SUPERFAMILY RING/U-box 307 356 - -
Trre5g04112 370 ProSiteProfiles Zinc finger RING-type profile. 309 347 IPR001841 -
Trre5g04112 370 Pfam Zinc finger, C3HC4 type (RING finger) 307 350 - -
Trre5g04112 370 ProSitePatterns Zinc finger RING-type signature. 324 333 IPR017907 -
Trre5g04112 370 MobiDBLite consensus disorder prediction 8 24 - -
Trre5g04112 370 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 19 370 IPR044235 GO:0061630|GO:1904294
Trre5g04112 370 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04112 Trre-Chr5 42766420 42771551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04112 8 370 C3H Transcription Factor Family AT5G01960 61.475 1.81e-169 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04112 - K22379 gmx:100784614 535.798