Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04108 ATGGAAGCGTTGGTGTGCAGAAAATTGGGTGACCCAACGGTGAGCGTGGAAGAAGATAACAGCCCAATAAATGTATCAAAAAATCACCCAATCCCTCAATTGAATTCTCCTACAGCGGTGAGAGTTAGAGTCAAAGCTACAAGCTTGAATTTCGCTAATTACTTGCAGATTCTTGGCAAGTATCAGGAGAAACCCCCTTTGCCATTCATTCCTGGATCTGATTTTTCCGGCATCGTTGATTCCGTTGGTTCCAATGTCACCAATTTTCGTGTTGGAGACCCTGTTTGTTCCTTTGTTGCTCTTGGTTCTTATGCTCAGTATATAGTTGTTGATCAGAACGAATTGTTTCGGGTGCCGCAAGGTTGCGATTTGGTTGCTGCTGGAGCACTTGCTGTGGCATTTGGCACTTCGCATGTTGCACTTGTTCATAGAGCTCGGTTGGCATCTGGTCAGGTATTGTTGGTTTTGGGTGCAGCAGGAGGTGTGGGTCTTGCAGCTGTGCAAATTGGAAAAGCATGCGGGGCTGTTGTCGTTGCTGTTGCTAGAGGAGCTGAAAAGGTGCAGCTCTTGAAATCACTTGGTGTGGATCATGTGGTGGACTTGGGTAATGAAAATGTCACCGTAAGTGTCAAAGAGTTCCTTAAGGTCAGAAGACTTAAAGGGGTCGATGTCCTGTATGACCCAGTTGGAGGCAAGCTTAACAAAGAATCTTTGCGGCTTCTGAAATGGGGAGCTAACATTCTAATAATTGGGTTTGCAAGTGGAGAAGTTCCTGTCATCCCTGCTAACATAGCCCTTGTTAAGAATTGGACAGTACATGGCCTGTATTGGGGTAGTTATAAAATACACCGCCCAGTTGTTCTTGAAGACTCTCTGAAGGAGCTACTGTCTTGGTTGGCAAAAGGCTTAATTTCCGTTCATATTTCTCATTCTTACAGCCTGTCAGAGGCCAACCTCGCCTTCTCTGCCATAAGAGATAGGAAAGCCATAGGGAAAGTGATGATTGTATTCGATGAGAAAAGTACAAGATCTAAGCTGTAA 1041 0.4496 MEALVCRKLGDPTVSVEEDNSPINVSKNHPIPQLNSPTAVRVRVKATSLNFANYLQILGKYQEKPPLPFIPGSDFSGIVDSVGSNVTNFRVGDPVCSFVALGSYAQYIVVDQNELFRVPQGCDLVAAGALAVAFGTSHVALVHRARLASGQVLLVLGAAGGVGLAAVQIGKACGAVVVAVARGAEKVQLLKSLGVDHVVDLGNENVTVSVKEFLKVRRLKGVDVLYDPVGGKLNKESLRLLKWGANILIIGFASGEVPVIPANIALVKNWTVHGLYWGSYKIHRPVVLEDSLKELLSWLAKGLISVHISHSYSLSEANLAFSAIRDRKAIGKVMIVFDEKSTRSKL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04108 346 Gene3D - 34 331 - -
Trre5g04108 346 Pfam Zinc-binding dehydrogenase 161 300 IPR013149 -
Trre5g04108 346 Gene3D - 133 280 - -
Trre5g04108 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 122 288 IPR036291 -
Trre5g04108 346 CDD QOR1 1 335 - -
Trre5g04108 346 SMART PKS_ER_names_mod 21 335 IPR020843 GO:0016491
Trre5g04108 346 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1 336 - -
Trre5g04108 346 Pfam Alcohol dehydrogenase GroES-like domain 38 97 IPR013154 -
Trre5g04108 346 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 150 171 IPR002364 GO:0008270|GO:0016491
Trre5g04108 346 SUPERFAMILY GroES-like 29 148 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04108 Trre-Chr5 42739646 42743167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04108 68 266 Monolignol Biosynthesis Gene Families AT1G72680 26.809 5.00e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04108 K00344 - gmx:100817700 557.755