Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04100 ATGGAGGATGGGGTGTTTTTCTTTGCTATGAAACTTGCTTCTTCACTTGCTATTGTGGGTATTATAAGTTGGATACTTTATATTTATGGCAATTTGTGGTATAAATCTCAAAGTATAAGAAGGAAACTACAAATACAAGGTATTAGAGGACCTCCATCTTCTTCTTTTCTACATGGGAATTTACCTGATATGCAGAGAATTAAAGCACAATCTAGTAGCTCCAAAGATAATGATCAGTTTCTAGCATATGATTATTCTGCAGCTCTGTTTCCATATTTTCAACACTGGAGGAAACAATACGGTCTAGTGTACACTTACTCCACAGGGATGAAGCAACATCTATATGTTAATGAACCAGAACTAGTGAGAGAAATGAACCAATGTATCACTTTGAATTTGGGTAAGCCTTCTTACATAACTAACAAACTTTCCCCAATGCTTGGAAATGGCATTTTGAGAGCCAATGGCAACAGTTGGGCACAACAAAGGAAACTTGTTGCAGCCGAGTTCTTCATGGACAAAGTTAAGGTTATGGTGGGGCTTATGATAGAGTCAGCACAGCCATTACTATTAAAATGGGAGCAACTTATTGAGGACCAAGGAGGGGTCACAGCTGAAGTTAAAGTTGATGCTGATTTGAGAGGCTTTTCAGCTGATGTTATTTCAAGAGTTTGTTTTGGACATTCTTATTCTAAGGGAAAAGAAGTTTTCTTAAAGCTTAGAAGCATCCAAAAGATAATGTCCAACCATGGCTTCCTTTTTGACAAGAGTGGTTTCCTAGACAAATTGAAATTTCGGACAAAGAAGCAAAATGAGATAAGCAATTTGGAGAAAGAGATAGAGTCACTGATATGGGAGTTAGTGGAGGAACGGAAGCGAGAATGCTCAACCGAAAAGGATTTGATGCAGTTACTGCTAGAAGCAGCAATGAGTGATCAAAGTTTGGGGAAGGACTTTTCCAAGCAATTCATTGTGGATAACTGCAAAAACATATACTTTGCTGGTCACGAAACAACTGCTGTTGCCGCTTCTTGGTGTTTGATGCTTCTTGCTTTATACCCCGAATGGCAAACTCGTATAAGGACAGAGGTTGCTCAACATTGCCCTAATGGCATACCGGATGCAGATTCTCTCCCTCTTTTGAAAACGGTGACTATGGTGATTCAAGAAGTGCTAAGACTATACCCACCAGCAGCCTTTGTATCAAGGGAAGCATATGAAGATGTCCAAATCGGAAACCTGAATGTTCCGAAAGGTGTTTGTTTATGGACTCTGATCCCAACTTTACACAGAGATCCTGAAATTTGGGGACCTGATTCAAATGAGTTTAAACCAGAAAGGTTCAGCGAGGGTGTCTCTAAGGCTATCAAATTTCCGCAAGCGTATGTGCCATTTGGAATAGGGAGTCGGTTATGCGTAGGGAAGAACTTCGCGATGGTTGAACTTAAGGTTGTGCTAGCACTTATTGTGTCCAAGTTTAGCTTCTCTTTGTCTCCTAGTTATAAGCATTCTCCTGCATACAATATGATTGTAGAGCCAGAACATGGTGTATATATTCTCATTCAGAAGAACTGA 1575 0.3981 MEDGVFFFAMKLASSLAIVGIISWILYIYGNLWYKSQSIRRKLQIQGIRGPPSSSFLHGNLPDMQRIKAQSSSSKDNDQFLAYDYSAALFPYFQHWRKQYGLVYTYSTGMKQHLYVNEPELVREMNQCITLNLGKPSYITNKLSPMLGNGILRANGNSWAQQRKLVAAEFFMDKVKVMVGLMIESAQPLLLKWEQLIEDQGGVTAEVKVDADLRGFSADVISRVCFGHSYSKGKEVFLKLRSIQKIMSNHGFLFDKSGFLDKLKFRTKKQNEISNLEKEIESLIWELVEERKRECSTEKDLMQLLLEAAMSDQSLGKDFSKQFIVDNCKNIYFAGHETTAVAASWCLMLLALYPEWQTRIRTEVAQHCPNGIPDADSLPLLKTVTMVIQEVLRLYPPAAFVSREAYEDVQIGNLNVPKGVCLWTLIPTLHRDPEIWGPDSNEFKPERFSEGVSKAIKFPQAYVPFGIGSRLCVGKNFAMVELKVVLALIVSKFSFSLSPSYKHSPAYNMIVEPEHGVYILIQKN 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04100 524 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 465 474 IPR017972 GO:0005506|GO:0016705
Trre5g04100 524 Gene3D Cytochrome P450 32 524 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g04100 524 Pfam Cytochrome P450 84 516 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g04100 524 PRINTS E-class P450 group I signature 462 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g04100 524 PRINTS E-class P450 group I signature 97 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g04100 524 PRINTS E-class P450 group I signature 216 234 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g04100 524 PRINTS E-class P450 group I signature 323 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g04100 524 PRINTS E-class P450 group I signature 343 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g04100 524 PRINTS E-class P450 group I signature 472 495 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g04100 524 PRINTS P450 superfamily signature 386 397 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g04100 524 PRINTS P450 superfamily signature 463 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g04100 524 PRINTS P450 superfamily signature 472 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g04100 524 PRINTS P450 superfamily signature 334 351 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g04100 524 Coils Coil 266 293 - -
Trre5g04100 524 PANTHER CYTOCHROME P450 FAMILY MEMBER 31 516 - -
Trre5g04100 524 SUPERFAMILY Cytochrome P450 86 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04100 Trre-Chr5 42634658 42639597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04100 121 521 Cytochrome P450 AT5G24900 57.598 1.29e-178 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04100 K20661 - gmx:100818766 881.708