Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04097 ATGCCATTCCAAGAAATTCTTGCTTCCACTAAAGAGGATCGTTATCTTGATGTGATTGGCCATGTTGTTGAAAAAACTGCTATGAAAGAAACTCAGAAGAATGGAAAGATTAACAAGGTTATGGATGCTACCCTTGAGGACTTGGAAGGGAATAGGGTCCATTGCACCTTATGGGATGATTTTGCTTTCAAAATGCAACAATTTTTAGACACTCATGACCCATCGCTACCTGTTGTGATCATATTCCAACTTTGCAAGCTAAAAAAGTATCTTGGTTTTATGGGCATTTCAAACTCTTTCCATGGTTCAAAGCTTTTTCTGAATGCTGGGCTTCCTGAGGCTACTGATTATATAGAAAGGATGAATGCTTCCAATGTGGAGCTAACTCAGGGTGTAAGTCAAATGACTGGTCCAACTGTGATTAGTACTGCTGATGATTTGCTTCAGACTCCTAGAATGACCATTGAAGATCTTATAGAAGCAAGTGAGAAATGTCATGGTTCTGTCTTAGCATGGACATGTGAATTTGCCACAGATGCAGGTTGGTTTTACCAGGCCTGTACTAAATGTTCATCAAGGATCAACTTTATGGGTGGTCAGCTCTATTGTGATAAGTGCAAGCTACCAAGGACTGCAATACCTAAGTATAAAGTCCATTTGGAAGTCATTGACAATACTGGCTCCATAACTTTTGTACTCTTTGATCGCGTTGTTACCCAAGTGGTTGGGCGAACTGCACAAGACCTACTTGACTCTATCAATGATGCAGATCACAGGGTTAAGCCATTCCCTCCTCAATTAGATGTGTTTGTTAACAAGCGCATCCTTTTCAAGGTGGAGCTGAGTGGCGACAATGAGTATGCTCTTGATGTTGGTGGATCTGATACCCATGGTGCTGCTGATGATGCTTCATTGGATGTAATCGAGGGAGTTGATTCAAGTGTTAATGAAGGCATCGTGTCTCTCGATGGTACTCACACTCCAAGTAGCAAGGTTGTCCGGGAGAAGGATGCTGACTTTGGTAATGTTGGGGGCTCTTCCACCAAGAAGTTGTTTGCATCCAATGAGTCTGTTGACTTGGCTGGCACAGTTGATGCTCCAACTACCAGATCAGCTGGGAAAAGATCTGCTAACCCTCATGAGGTTGAGGTGGCTGCACCAAAAGAGATTAAAATGGCTTGTGTGAAGAATGCAAATGTCAACTGA 1206 0.4245 MPFQEILASTKEDRYLDVIGHVVEKTAMKETQKNGKINKVMDATLEDLEGNRVHCTLWDDFAFKMQQFLDTHDPSLPVVIIFQLCKLKKYLGFMGISNSFHGSKLFLNAGLPEATDYIERMNASNVELTQGVSQMTGPTVISTADDLLQTPRMTIEDLIEASEKCHGSVLAWTCEFATDAGWFYQACTKCSSRINFMGGQLYCDKCKLPRTAIPKYKVHLEVIDNTGSITFVLFDRVVTQVVGRTAQDLLDSINDADHRVKPFPPQLDVFVNKRILFKVELSGDNEYALDVGGSDTHGAADDASLDVIEGVDSSVNEGIVSLDGTHTPSSKVVREKDADFGNVGGSSTKKLFASNESVDLAGTVDAPTTRSAGKRSANPHEVEVAAPKEIKMACVKNANVN 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04097 401 Gene3D - 142 289 IPR012340 -
Trre5g04097 401 PANTHER OS03G0429900 PROTEIN 30 286 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre5g04097 401 SUPERFAMILY Nucleic acid-binding proteins 2 124 IPR012340 -
Trre5g04097 401 CDD RPA1_DBD_B_like 17 121 - -
Trre5g04097 401 CDD RPA1_DBD_C 181 285 IPR047192 -
Trre5g04097 401 Pfam Replication factor-A C terminal domain 178 258 IPR013955 -
Trre5g04097 401 SUPERFAMILY Nucleic acid-binding proteins 150 279 IPR012340 -
Trre5g04097 401 Gene3D - 1 130 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04097 Trre-Chr5 42575198 42577409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04097 1 287 Core DNA Replication Machinery Family AT5G08020 24.832 6.03e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04097 - - tpra:123896123 449.129