Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04094 ATGGAGACTCTGAAAGGTGCAATTCCAAATGAACTAAAACAAGCAATTAGGGATAGCAGCAATGTAGAAGATACTCTTCGCGACACTTGTTCTTCTCTTCATCATTTCTTTCTTCATTTTCAACCATTTCACCAGATTGTGACTGAACTTGCTGACCCAAGCTATGCACTGTGCGGTAAGAGTCAAGAAGCTGCTTTGGAATATAAGCAGTTTGGTAATCAATGCTTCTCCGACGCTCATTATGCGAAGGCTCTCGATTATTATACTCAGGCATTGCGCAGGGCTCCTTTTGAAGTTGGTGGTGACATGAAAACTAATCTGGTTGCAACATTGTATATCAATCGAGCTACTGTATTGCATAAAATGAATCTTTTAGTAGAATGTTTGCGAGACTGCAATCGAGCTCTTCAGATATGTCCAAGCTATGCAAAGGCATGGTATAGAAGAGGAAAGGCAAACGTTTCATTGGGAAATAATAGAGATGCAATCTATGACTTAAATATAGCTAAGAGTGTCGAATCGTCAACCGGTGGGAAGAGAGAAGTAGAAAGTGAGCTGAAAATTATTTTAGACCAATCCAAGAACACAAGTATAGCTGTACAGACGCAACATAAGGAGAACAGCTTGATTACAGTGGGTGAGTTGCCTCAAATAAAGCTGCGAAGTGTCTCCATGCCTGATAAAGGAAGAGGCATGGTGCCGCCACATGATGTTTCACCAGGTTCGTTGGTTCATGCTGAAGAACCTTATGCTACAATAATATTAAAACAATGTCGGGAAACTCATTGCCATTATTGCTTTAATGACCTACCTGCTGATAGAGTTCCTTGTATATCATGTTCAATACCATTGTACTGCTCCCAGCAATGCCAGATAAAGGCAGGCGGGGAAATGTTCAGGATTTCCACAGAAGATAGTAATATTCTTAAAAACTTACCCCGCGATATTGGAAAATATGCTGCTGAAGTGATTCAATACAATGATTGTGAACAAAAGATTGATGATGTTACTGAACATAAACATGAATGTCAAGGGGTACATTGGCCTGCTGTACTGCCTTCTGAGATAGTTTTGGCCGGCAGAGTTCTAGCAAAGTTTTTGTCGAAGAGTTTGTCTGGAGATATCGCAAGTTTTGTGGAAAAGCTGGAACTTTCTCATTGTTACGAACATATGCCATTTGAAAGTAAATTGGATTCACATATATACGCCATTGTATTGTTATATTGTCTTAAACACTCTTATGGAACTATGGTTTCCATCAACGGAATCTCTATATCACAGGTTGTCATAGTTATATCTCAGATTAAAGTGAATTGTATGACTGTTGTTCGTTTAAAATCAATAGATGCTCATGGACTGTCAGATCAATCTGGAGGATTTCCATTTCATTCCAATGTACATTTAACTAGTAATGTGGAACAGGTCAGGGTGGGTAAAGCTATTTATAAAGCTGGCAGTTTATTCAACCATTCTTGCCAGCCAAATGTTCATGCATATTTTCTTTCACGCACACTCTATTTACGAACAACAAAAGTTGTAGCAGCTGGGTGTGAGCTGGAATTGTCTTATGGTCCACAGGTTGGATTGTGGGATTGTAAAGATCGCCAAAATTTTCTCAAAGATGAATACGCATTTCATTGTCAATGTACTGGTTGTTCAGAAGTTAATCTATCTGACATTGTCCTCAATGCTTTTCATTGTGTCAAACCAAATTGTTCCGGCGCAGTGTTGGAAAGCAGAGTACTTGAGTGTGAAAAGCAGAAAATCAAACACTTCCCTATTGCTAACAAAGTTATCAAGAAGGATGACATCTATGAAGTATGTCTTCACGCATTTAACCAAAATGACGCCTCTATTCATATTCAACCTGGATACTGTTTGAAATGTGGTTCTTACTGTGATCTGGAGGCATCACGTGCCACAGTTGATAAAGCCTTAATATGCATTAAAAGGCTGCAGGATGCAATACTGTCAAAAGAAATTACAAGTACTTCCATTTCAGACGCTTTGAGATCTCTTCATTTGCTGAGATCAAATTTGCATGCATACAATAAGGTTATTGCAGAGGCAGAAGACAACCTAGCCCAAGCTTTTTGTTTAGTGGGAGAACTACAATTATCCGCCGATCATTGTAAAGCATCTATTCAGATTCTGGAGAAGCTATATGATCCTGATGATATTGTTATTGCTTATGAACTTGTGAAGCTTTCATCCGTCCAACTTTCCTTGGGTGATGATAGTGCTGTCGACAGCATTAGTCGGATAGGTGCTATCTTCTCGTGTTATTATGGACTTCATGCAGACTTGGTCTTTCCCCATCTTCAGTACCTTAGGAAAGAAATTTAG 2346 0.3913 METLKGAIPNELKQAIRDSSNVEDTLRDTCSSLHHFFLHFQPFHQIVTELADPSYALCGKSQEAALEYKQFGNQCFSDAHYAKALDYYTQALRRAPFEVGGDMKTNLVATLYINRATVLHKMNLLVECLRDCNRALQICPSYAKAWYRRGKANVSLGNNRDAIYDLNIAKSVESSTGGKREVESELKIILDQSKNTSIAVQTQHKENSLITVGELPQIKLRSVSMPDKGRGMVPPHDVSPGSLVHAEEPYATIILKQCRETHCHYCFNDLPADRVPCISCSIPLYCSQQCQIKAGGEMFRISTEDSNILKNLPRDIGKYAAEVIQYNDCEQKIDDVTEHKHECQGVHWPAVLPSEIVLAGRVLAKFLSKSLSGDIASFVEKLELSHCYEHMPFESKLDSHIYAIVLLYCLKHSYGTMVSINGISISQVVIVISQIKVNCMTVVRLKSIDAHGLSDQSGGFPFHSNVHLTSNVEQVRVGKAIYKAGSLFNHSCQPNVHAYFLSRTLYLRTTKVVAAGCELELSYGPQVGLWDCKDRQNFLKDEYAFHCQCTGCSEVNLSDIVLNAFHCVKPNCSGAVLESRVLECEKQKIKHFPIANKVIKKDDIYEVCLHAFNQNDASIHIQPGYCLKCGSYCDLEASRATVDKALICIKRLQDAILSKEITSTSISDALRSLHLLRSNLHAYNKVIAEAEDNLAQAFCLVGELQLSADHCKASIQILEKLYDPDDIVIAYELVKLSSVQLSLGDDSAVDSISRIGAIFSCYYGLHADLVFPHLQYLRKEI 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04094 781 Pfam SET domain 465 524 IPR001214 GO:0005515
Trre5g04094 781 Gene3D SET domain 416 523 IPR046341 -
Trre5g04094 781 Gene3D Tetratricopeptide repeat domain 529 771 IPR011990 GO:0005515
Trre5g04094 781 Coils Coil 673 693 - -
Trre5g04094 781 Gene3D SET domain 231 261 IPR046341 -
Trre5g04094 781 Gene3D Tetratricopeptide repeat domain 41 206 IPR011990 GO:0005515
Trre5g04094 781 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 780 - -
Trre5g04094 781 SUPERFAMILY SET domain 207 554 IPR046341 -
Trre5g04094 781 SUPERFAMILY TPR-like 61 169 IPR011990 GO:0005515
Trre5g04094 781 ProSiteProfiles SET domain profile. 216 524 IPR001214 GO:0005515
Trre5g04094 781 Gene3D - 262 294 - -
Trre5g04094 781 ProSiteProfiles TPR repeat profile. 65 98 IPR019734 GO:0005515
Trre5g04094 781 SMART tpr_5 65 98 IPR019734 GO:0005515
Trre5g04094 781 SMART tpr_5 143 176 IPR019734 GO:0005515
Trre5g04094 781 SMART tpr_5 109 142 IPR019734 GO:0005515
Trre5g04094 781 SMART tpr_5 688 721 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04094 Trre-Chr5 42544769 42558181 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre5g04094 SET 8.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04094 K24634 - gmx:100783548 1187.56