Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04093 ATGGAAGAAGAAGATGGTCATGATGATAATGAGATGATGATGAAGAATGTGGTGAGAGCTGTGCCATTTTTTAAACTATTGAGCTATGCTGACTATGTGGATTGGATTCTTATGGGTTTAGGAACATTAGGTTCCATTGTGCATGGCATGGCACTTCCTGTTGGATATTTGTTGTTAGGAAAAGCTCTTAATGCTTTTGGTAACAATATTCATGACATTAATGCTATGGTTCCTGCTCTTAAAAAGGTTATTCCATTTGTATGGTACATGGCCATTGCCACATTTCCTGCTGGGGTACTTGAGATTGGTTGTTGGATGTATGCAAGTGAAAGACAGTTATCACGCCTAAGATTAGCATATCTAAAAGCAGTCCTAAACCAAGAGATAGGAGCTTTTGATACAGAATTAACAAGTGGAAAAGTAATCACTGGAATAAGCAAGCACATGAGTGTAATACAAGATGCCATTGGTGAGAAGTTGGGTCACTTCACTTCTAGCTGTGCAACTTTCTTTGCCGGAATTGTGATTGCCGCGATTTGCTGTTGGGAAGTGGCACTTCTATGTTTAGTTGTTGTCCCTCTTATTCTTATTATTGGAGCAACTTACACTAAGAAAATGAACAAAATCTCAACTACTAAATTGTTTTACCATTCTGAAGCCACATCTATGATAGAGCAGACAATATCACAAATAAAAACAGTATATGCTTTTGTTGGAGAGGGATTAGCAATCAAATCCTTCACAGAGAACATGGAAAATCAGTATGTCGTAAGCAAAGGGGAGGCACTTGTGAAGGGAGTTGGAACAGGAATGTTTCAAACTGTGAGTTTTTGTTCTTGGTCTCTTATTATATGGGTTGGAGCTGTTGTCGTCAGAGCCGGAAGAGCTAAGGGAGGAGATATAATAGCTGCAGTAATGAGTATTCTTTTTGGTGCCATATCTATCACTTATGCAGCACCAGACATGCAAATATTCAATCAGGCGAAAGCTGCCGGGTACGAGGTCTTCGAAGTGATCCAAAGAAAGGCACTAATACACAATGAATCAAAAGGGGAGATGCCTAGTAAGATTAACGGTTACATTGAGCTCCGAAATGTTTACTTTTCATACCCATCACGGCCGGAGAAACCTATCCTTCAAGGACTGTCGTTGTCCATACCAGCAGGAAAGACAGTAGCTCTAGTTGGTAGCAGCGGCTGCGGAAAGAGCACTGTTATTTCTCTAATAACTAGGTTTTATGACCCCATGCGAGGAGAAATTTTTATTGACAGTCACAATATCAAGGACCTCGATCTGAAGTTCCTTCGAAGTAATATAGGGGCCGTTTACCAAGAGCCATCACTCTTCACAGGCACGATCAAGGACAACTTGAAACTGGGAAAGATGGACGCGGATGATGAAGAGATTCAAAAGGCAGCAGTAATGTCCAATGCACACTCTTTCATATCACAGCTTCCGAATCAATACCTAACTGAGGTAGGACAAAGGGGAGTTCAAGTATCAGGAGGTCAGAAACAAAGAATTGCAATTGCAAGAGCCATTCTGAAAAATCCTCCCATTCTTTTGCTTGACGAGGCCACTAGTGCCCTTGATTCAGAGTCGGAAAAACTGGTTCAAGAAGCACTTGATACAGCTATGCAGGGAAGGACTGTCATCTTGATTGCACACAGGCTGTCAACAGTTGTAAATGCAGATATGATTGCTGTAGTGGAGAATGGACAAATTGTAGAGACAGGAACACACCAGAGTTTGTTGAACACGAGTAAATTCTATAGTACATTATTCAGCATGCAGAACCTTGAATCATCTCCTGAACTAAGAACTACAACTTCCAAAAATAAAATTGCCCGCCAAGAAGCCAGTATTGATGAAACTAGACCATTACCAGATACACAGAGAGAGGTTCAAAGAGATCTCGTAGAGCCTTCGGTGCTCAGAGAACAGAACAAGATGAACATAAGAGAAGGAAATATATTTTTCAGAATTTGGTTCGATTTAAAAAAGAAGGAGCTGGTGAAGATTGCTATTGGCTCGTTTGCAGCAGCTTTCTCTGGCATCTCAAAGCCGTTTTTCGGATTCTACATCATCACAATTGGAGTAGCATACTTCGAAGAAGATGCTAAACGAAAAGTTGGAATGTACTCAGCCATCTTCTCTGGAATAGGGTTGCTTTCACTATTTAGCCACACCTTCCAGCATTACTTCTTTGGAGTGGTTGGAGAAAAGGCCATGTCAAATTTCAGACTTGCTCTATATTCAGGTGTGCTTAGTAACGAAGTAGGCTGGTTTGACAAACCTGAGAACACTGTCGGCTCATTAACATCACGCATCATCAGTGATACTGCCATGGTCAAAATCATAATTGCTGATCGCATGTCTGTGATTGTGCAATGTGTTTCCTCCATACTTATAGCAACAGTTGTTAGCATGTATGTCAACTGGAGAATGGGTTTGGTAGCATGGGCTGTGATGCCTTGCCATTTCATAGGTGGTCTCATTCAAGCCAAGTCTGCCAAAGGATTTTCAGGTGACTATTCTGCTACACATTCAGACCTTGTTGCTCTTGCGTCTGAGTCCACGACCAACATAAGAACTATTGCATCATTTTGTCATGAAGAACAAGTGCTGAAGAAAGCCAAAATATATCTGGACATACCAAAGAAAAAGTACAGGAAAGAAAGTATCAAATACGGCATCATTCAAGGCTTCTCCCTTTGCTTGTGGAACATTGCACACGCGGTTGCTTTGTGGTACACAACAATTCTAGTTGATAGACGTCAAGCCACCTTTGAAAATGGAATAAGAGCATACCAAATTTTTTCACTCACAGTTCCTTCTATCACAGAACTATACACACTGATCCCAACTGTCATCACTGCCATCAATATGCTTACCCCAGCATTCAAAACCTTTGACCGTAAAACTGAAATTGAACCAGATATACCGGATGATTCCCAACCCGAGAGGATCCAAGGAAATGTCGAATTTGAAAATGTAAATTTCAAGTACCCTTTAAGACCTGAGGTGACTGTTCTTGAAAATTTCAGTTTACAAATTGAAGCCGGATCTAAGGTCGCTTTTGTAGGACCAAGTGGCGCTGGAAAATCATCTGTATTGGCCCTTTTACTGAGATTTTATGATCCAGTGGTGGGAAAAGTATTAATCGACGGGAAAGACTTGAAGGAATATAATCTAAGATGGTTAAGGACACAGATAGGGCTGGTACAACAAGAGCCACTGCTTTTTAACTGCTCAATTAGAGACAATGTTTGCTATGGCAATAAAGCGGCTTCTGAAAGTGAAATTGTGGAGGTTTCAAGAGAAGCAAATATACATGAATTTGTAAGTAATCTACCAAATGGATATGACACTGTTGTTGGAGAGAAAGGTTGCCAGCTTTCAGGAGGACAAAAGCAAAGAATAGCCATTGCCAGAACCTTACTAAAGAAGCCAGCAATATTACTTCTTGATGAAGCAACGAGTGCCCTCGATGCTGAGTCCGAAAGAACTATAGTAAATGCAATTAAAGAAATGAATCTGAAAGAAGAAAGTGGTTTGTGTTCAAGAATCACTCAGATCACAGTAGCTCATAGACTTTCAACAGTCAGAAACTCGGATACCATAATTGTCATGGAAAAAGGTAGAATTGTAGAGACGGGCTCCCACTCAACCCTAATATCAGTAGATGCAGGACTTTATTCAAGATTATTCAGACTGCAGAGCTTTGACGAAACCTCATAG 3741 0.4068 MEEEDGHDDNEMMMKNVVRAVPFFKLLSYADYVDWILMGLGTLGSIVHGMALPVGYLLLGKALNAFGNNIHDINAMVPALKKVIPFVWYMAIATFPAGVLEIGCWMYASERQLSRLRLAYLKAVLNQEIGAFDTELTSGKVITGISKHMSVIQDAIGEKLGHFTSSCATFFAGIVIAAICCWEVALLCLVVVPLILIIGATYTKKMNKISTTKLFYHSEATSMIEQTISQIKTVYAFVGEGLAIKSFTENMENQYVVSKGEALVKGVGTGMFQTVSFCSWSLIIWVGAVVVRAGRAKGGDIIAAVMSILFGAISITYAAPDMQIFNQAKAAGYEVFEVIQRKALIHNESKGEMPSKINGYIELRNVYFSYPSRPEKPILQGLSLSIPAGKTVALVGSSGCGKSTVISLITRFYDPMRGEIFIDSHNIKDLDLKFLRSNIGAVYQEPSLFTGTIKDNLKLGKMDADDEEIQKAAVMSNAHSFISQLPNQYLTEVGQRGVQVSGGQKQRIAIARAILKNPPILLLDEATSALDSESEKLVQEALDTAMQGRTVILIAHRLSTVVNADMIAVVENGQIVETGTHQSLLNTSKFYSTLFSMQNLESSPELRTTTSKNKIARQEASIDETRPLPDTQREVQRDLVEPSVLREQNKMNIREGNIFFRIWFDLKKKELVKIAIGSFAAAFSGISKPFFGFYIITIGVAYFEEDAKRKVGMYSAIFSGIGLLSLFSHTFQHYFFGVVGEKAMSNFRLALYSGVLSNEVGWFDKPENTVGSLTSRIISDTAMVKIIIADRMSVIVQCVSSILIATVVSMYVNWRMGLVAWAVMPCHFIGGLIQAKSAKGFSGDYSATHSDLVALASESTTNIRTIASFCHEEQVLKKAKIYLDIPKKKYRKESIKYGIIQGFSLCLWNIAHAVALWYTTILVDRRQATFENGIRAYQIFSLTVPSITELYTLIPTVITAINMLTPAFKTFDRKTEIEPDIPDDSQPERIQGNVEFENVNFKYPLRPEVTVLENFSLQIEAGSKVAFVGPSGAGKSSVLALLLRFYDPVVGKVLIDGKDLKEYNLRWLRTQIGLVQQEPLLFNCSIRDNVCYGNKAASESEIVEVSREANIHEFVSNLPNGYDTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERTIVNAIKEMNLKEESGLCSRITQITVAHRLSTVRNSDTIIVMEKGRIVETGSHSTLISVDAGLYSRLFRLQSFDETS 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04093 1246 MobiDBLite consensus disorder prediction 605 634 - -
Trre5g04093 1246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 994 1238 IPR003439 GO:0005524
Trre5g04093 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 987 1240 IPR027417 -
Trre5g04093 1246 MobiDBLite consensus disorder prediction 617 634 - -
Trre5g04093 1246 FunFam ABC transporter B family member 4 351 605 - -
Trre5g04093 1246 CDD ABC_6TM_Pgp_ABCB1_D2_like 668 977 - -
Trre5g04093 1246 CDD ABC_MTABC3_MDL1_MDL2 361 598 - -
Trre5g04093 1246 PANTHER ABC TRANSPORTER B FAMILY 4 727 IPR039421 -
Trre5g04093 1246 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 675 959 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g04093 1246 CDD ABC_6TM_Pgp_ABCB1_D1_like 38 335 - -
Trre5g04093 1246 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g04093 1246 SMART AAA_5 388 580 IPR003593 GO:0016887
Trre5g04093 1246 SMART AAA_5 1021 1215 IPR003593 GO:0016887
Trre5g04093 1246 SUPERFAMILY ABC transporter transmembrane region 25 341 IPR036640 GO:0005524|GO:0016020
Trre5g04093 1246 Gene3D - 984 1245 IPR027417 -
Trre5g04093 1246 Pfam ABC transporter 1012 1161 IPR003439 GO:0005524
Trre5g04093 1246 Gene3D ABC transporter type 1, transmembrane domain 25 957 IPR036640 GO:0005524|GO:0016020
Trre5g04093 1246 Pfam ABC transporter transmembrane region 39 312 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g04093 1246 Pfam ABC transporter transmembrane region 676 933 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g04093 1246 Pfam ABC transporter 379 528 IPR003439 GO:0005524
Trre5g04093 1246 ProSitePatterns ABC transporters family signature. 500 514 IPR017871 GO:0005524|GO:0016887
Trre5g04093 1246 Gene3D - 351 599 IPR027417 -
Trre5g04093 1246 ProSitePatterns ABC transporters family signature. 1133 1147 IPR017871 GO:0005524|GO:0016887
Trre5g04093 1246 FunFam ABC transporter B family member 1 984 1241 - -
Trre5g04093 1246 SUPERFAMILY ABC transporter transmembrane region 668 980 IPR036640 GO:0005524|GO:0016020
Trre5g04093 1246 CDD ABC_MTABC3_MDL1_MDL2 994 1240 - -
Trre5g04093 1246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 361 597 IPR003439 GO:0005524
Trre5g04093 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 598 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04093 Trre-Chr5 42515388 42521833 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04093 24 619 Calmodulin-binding Proteins AT2G36910 34.603 2.23e-96 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04093 K05658 - zju:107414909 1797.71