Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04092 ATGGCACCCCCTGGCAGACCAAAAAAAGTTGTGCAAATGGAAGAAGAAGATGGTCATGATGATAATGAGATGATGATGAAGAATGTGGTGAGAGCTGTGCCATTTTTTAAACTATTGAGCTATGCTGACTATGTGGATTGGATTCTTATGGGTTTAGGAACATTAGGTTCCATTGTGCATGGCATGGCACTTCCTGTTGGATATTTGTTGTTAGGAAAAGCTCTTAATGCTTTTGGTAACAATATTCATGACATTAATGCTATGGTTCCTGCTCTTAAAAAGGTTATTCCATTTGTATGGTACATGGCCATTGCCACATTTCCTGCTGGGGTACTTGAGATTGGTTGTTGGATGTATGCAAGTGAAAGACAGTTATCACGCCTAAGATTAGCATATCTAAAAGCAGTCCTAAACCAAGAGATAGGAGCTTTTGATACAGAATTAACAAGTGGAAAAGTAATCACTGGAATAAGCAAGCACATGAGTGTAATACAAGATGCCATTGGTGAGAAGTTGGGTCACTTCACTTCTAGCTGTGCAACTTTCTTTGCCGGAATTGTGATTGCCGCGATTTGCTGTTGGGAAGTGGCACTTCTATGTTTAGTTGTTGTCCCTCTTATTCTTATTATTGGAGCAACTTACACTAAGAAAATGAACAAAATCTCAACTACTAAATTGTTTTACCATTCTGAAGCCACATCTATGATAGAGCAGACAATATCACAAATAAAAACAGTATATGCTTTTGTTGGAGAGGGATTAGCAATCAAATCCTTCACAGAGAACATGGAAAATCAGTATGTCGTAAGCAAAGGGGAGGCACTTGTGAAGGGAGTTGGAACAGGAATGTTTCAAACTGTGAGTTTTTGTTCTTGGTCTCTTATTATATGGGTTGGAGCTGTTGTCGTCAGAGCCGGAAGAGCTAAGGGAGGAGATATAATAGCTGCAGTAATGAGTATTCTTTTTGGTGCCATATCTATCACTTATGCAGCACCAGACATGCAAATATTCAATCAGGCGAAAGCTGCCGGGTACGAGGTCTTCGAAGTGATCCAAAGAAAGGCACTAATACACAATGAATCAAAAGGGGAGATGCCTAGTAAGATTAACGGTTACATTGAGCTCCGAAATGTTTACTTTTCATACCCATCACGGCCGGAGAAACCTATCCTTCAAGGACTGTCGTTGTCCATACCAGCAGGAAAGACAGTAGCTCTAGTTGGTAGCAGCGGCTGCGGAAAGAGCACTGTTATTTCTCTAATAACTAGGTTTTATGACCCCATGCGAGGAGAAATTTTTATTGACAGTCACAATATCAAGGACCTCGATCTGAAGTTCCTTCGAAGTAATATAGGGGCCGTTTACCAAGAGCCATCACTCTTCACAGGCACGATCAAGGACAACTTGAAACTGGGAAAGATGGACGCGGATGATGAAGAGATTCAAAAGGCAGCAGTAATGTCCAATGCACACTCTTTCATATCACAGCTTCCGAATCAATACCTAACTGAGGTAGGACAAAGGGGAGTTCAAGTATCAGGAGGTCAGAAACAAAGAATTGCAATTGCAAGAGCCATTCTGAAAAATCCTCCCATTCTTTTGCTTGACGAGGCCACTAGTGCCCTTGATTCAGAGTCGGAAAAACTGGTTCAAGAAGCACTTGATACAGCTATGCAGGGAAGGACTGTCATCTTGATTGCACACAGGCTGTCAACAGTTGTAAATGCAGATATGATTGCTGTAGTGGAGAATGGACAAATTGTAGAGACAGGAACACACCAGAGTTTGTTGAACACGAGTAAATTCTATAGTACATTATTCAGCATGCAGAACCTTGAATCATCTCCTGAACTAAGAACTACAACTTCCAAAAATAAAATTGCCCGCCAAGAAGCCAGTATTGATGAAACTAGACCATTACCAGATACACAGAGAGAGGTTCAAAGAGATCTCGTAGAGCCTTCGGTGCTCAGAGAACAGAACAAGATGAACATAAGAGAAGGAAATATATTTTTCAGAATTTGGTTCGATTTAAAAAAGAAGGAGCTGGTGAAGATTGCTATTGGCTCGTTTGCAGCAGCTTTCTCTGGCATCTCAAAGCCGTTTTTCGGATTCTACATCATCACAATTGGAGTAGCATACTTCGAAGAAGATGCTAAACGAAAAGTTGGAATGTACTCAGCCATCTTCTCTGGAATAGGGTTGCTTTCACTATTTAGCCACACCTTCCAGCATTACTTCTTTGGAGTGGTTGGAGAAAAGGCCATGTCAAATTTCAGACTTGCTCTATATTCAGGTGTGCTTAGTAACGAAGTAGGCTGGTTTGACAAACCTGAGAACACTGTCGGCTCATTAACATCACGCATCATCAGTGATACTGCCATGGTCAAAATCATAATTGCTGATCGCATGTCTGTGATTGTGCAATGTGTTTCCTCCATACTTATAGCAACAGTTGTTAGCATGTATGTCAACTGGAGAATGGGTTTGGTAGCATGGGCTGTGATGCCTTGCCATTTCATAGGTGGTCTCATTCAAGCCAAGTCTGCCAAAGGATTTTCAGGTGACTATTCTGCTACACATTCAGACCTTGTTGCTCTTGCGTCTGAGTCCACGACCAACATAAGAACTATTGCATCATTTTGTCATGAAGAACAAGTGCTGAAGAAAGCCAAAATATATCTGGACATACCAAAGAAAAAGTACAGGAAAGAAAGTATCAAATACGGCATCATTCAAGGCTTCTCCCTTTGCTTGTGGAACATTGCACACGCGGTTGCTTTGTGGTACACAACAATTCTAGTTGATAGACGTCAAGCCACCTTTGAAAATGGAATAAGAGCATACCAAATTTTTTCACTCACAGTTCCTTCTATCACAGAACTATACACACTGATCCCAACTGTCATCACTGCCATCAATATGCTTACCCCAGCATTCAAAACCTTTGACCGTAAAACTGAAATTGAACCAGATATACCGGATGATTCCCAACCCGAGAGGATCCAAGGAAATGTCGAATTTGAAAATGTAAATTTCAAGTACCCTTTAAGACCTGAGGTGACTGTTCTTGAAAATTTCAGTTTACAAATTGAAGCCGGATCTAAGGTCGCTTTTGTAGGACCAAGTGGCGCTGGAAAATCATCTGTATTGGCCCTTTTACTGAGATTTTATGATCCAGTGGTGGGAAAAGTATTAATCGACGGGAAAGACTTGAAGGAATATAATCTAAGATGGTTAAGGACACAGATAGGGCTGGTACAACAAGAGCCACTGCTTTTTAACTGCTCAATTAGAGACAATGTTTGCTATGGCAATAAAGCGGCTTCTGAAAGTGAAATTGTGGAGGTTTCAAGAGAAGCAAATATACATGAATTTGTAAGTAATCTACCAAATGGATATGACACTGTTGTTGGAGAGAAAGGTTGCCAGCTTTCAGGAGGACAAAAGCAAAGAATAGCCATTGCCAGAACCTTACTAAAGAAGCCAGCAATATTACTTCTTGATGAAGCAACGAGTGCCCTCGATGCTGAGTCCGAAAGAACTATAGTAAATGCAATTAAAGAAATGAATCTGAAAGAAGAAAGTGGTTTGTGTTCAAGAATCACTCAGATCACAGTAGCTCATAGACTTTCAACAGTCAGAAACTCGGATACCATAATTGTCATGGAAAAAGGTAGAATTGTAGAGACGGGCTCCCACTCAACCCTAATATCAGTAGATGCAGGACTTTATTCAAGATTATTCAGACTGCAGAGCTTTGACGAAACCTCATAG 3777 0.4077 MAPPGRPKKVVQMEEEDGHDDNEMMMKNVVRAVPFFKLLSYADYVDWILMGLGTLGSIVHGMALPVGYLLLGKALNAFGNNIHDINAMVPALKKVIPFVWYMAIATFPAGVLEIGCWMYASERQLSRLRLAYLKAVLNQEIGAFDTELTSGKVITGISKHMSVIQDAIGEKLGHFTSSCATFFAGIVIAAICCWEVALLCLVVVPLILIIGATYTKKMNKISTTKLFYHSEATSMIEQTISQIKTVYAFVGEGLAIKSFTENMENQYVVSKGEALVKGVGTGMFQTVSFCSWSLIIWVGAVVVRAGRAKGGDIIAAVMSILFGAISITYAAPDMQIFNQAKAAGYEVFEVIQRKALIHNESKGEMPSKINGYIELRNVYFSYPSRPEKPILQGLSLSIPAGKTVALVGSSGCGKSTVISLITRFYDPMRGEIFIDSHNIKDLDLKFLRSNIGAVYQEPSLFTGTIKDNLKLGKMDADDEEIQKAAVMSNAHSFISQLPNQYLTEVGQRGVQVSGGQKQRIAIARAILKNPPILLLDEATSALDSESEKLVQEALDTAMQGRTVILIAHRLSTVVNADMIAVVENGQIVETGTHQSLLNTSKFYSTLFSMQNLESSPELRTTTSKNKIARQEASIDETRPLPDTQREVQRDLVEPSVLREQNKMNIREGNIFFRIWFDLKKKELVKIAIGSFAAAFSGISKPFFGFYIITIGVAYFEEDAKRKVGMYSAIFSGIGLLSLFSHTFQHYFFGVVGEKAMSNFRLALYSGVLSNEVGWFDKPENTVGSLTSRIISDTAMVKIIIADRMSVIVQCVSSILIATVVSMYVNWRMGLVAWAVMPCHFIGGLIQAKSAKGFSGDYSATHSDLVALASESTTNIRTIASFCHEEQVLKKAKIYLDIPKKKYRKESIKYGIIQGFSLCLWNIAHAVALWYTTILVDRRQATFENGIRAYQIFSLTVPSITELYTLIPTVITAINMLTPAFKTFDRKTEIEPDIPDDSQPERIQGNVEFENVNFKYPLRPEVTVLENFSLQIEAGSKVAFVGPSGAGKSSVLALLLRFYDPVVGKVLIDGKDLKEYNLRWLRTQIGLVQQEPLLFNCSIRDNVCYGNKAASESEIVEVSREANIHEFVSNLPNGYDTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERTIVNAIKEMNLKEESGLCSRITQITVAHRLSTVRNSDTIIVMEKGRIVETGSHSTLISVDAGLYSRLFRLQSFDETS 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04092 1258 PANTHER ABC TRANSPORTER B FAMILY 12 739 IPR039421 -
Trre5g04092 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1250 IPR003439 GO:0005524
Trre5g04092 1258 Gene3D - 363 611 IPR027417 -
Trre5g04092 1258 Gene3D - 996 1257 IPR027417 -
Trre5g04092 1258 ProSitePatterns ABC transporters family signature. 512 526 IPR017871 GO:0005524|GO:0016887
Trre5g04092 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 971 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g04092 1258 ProSitePatterns ABC transporters family signature. 1145 1159 IPR017871 GO:0005524|GO:0016887
Trre5g04092 1258 Gene3D ABC transporter type 1, transmembrane domain 37 969 IPR036640 GO:0005524|GO:0016020
Trre5g04092 1258 SUPERFAMILY ABC transporter transmembrane region 680 992 IPR036640 GO:0005524|GO:0016020
Trre5g04092 1258 CDD ABC_MTABC3_MDL1_MDL2 1006 1252 - -
Trre5g04092 1258 SMART AAA_5 400 592 IPR003593 GO:0016887
Trre5g04092 1258 SMART AAA_5 1033 1227 IPR003593 GO:0016887
Trre5g04092 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 52 339 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g04092 1258 Pfam ABC transporter 391 540 IPR003439 GO:0005524
Trre5g04092 1258 MobiDBLite consensus disorder prediction 617 646 - -
Trre5g04092 1258 MobiDBLite consensus disorder prediction 629 646 - -
Trre5g04092 1258 CDD ABC_6TM_Pgp_ABCB1_D2_like 680 989 - -
Trre5g04092 1258 CDD ABC_MTABC3_MDL1_MDL2 373 610 - -
Trre5g04092 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 999 1252 IPR027417 -
Trre5g04092 1258 Pfam ABC transporter 1024 1173 IPR003439 GO:0005524
Trre5g04092 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 610 IPR027417 -
Trre5g04092 1258 SUPERFAMILY ABC transporter transmembrane region 37 353 IPR036640 GO:0005524|GO:0016020
Trre5g04092 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 373 609 IPR003439 GO:0005524
Trre5g04092 1258 FunFam ABC transporter B family member 4 363 617 - -
Trre5g04092 1258 Pfam ABC transporter transmembrane region 51 324 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g04092 1258 Pfam ABC transporter transmembrane region 688 945 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g04092 1258 CDD ABC_6TM_Pgp_ABCB1_D1_like 50 347 - -
Trre5g04092 1258 FunFam ABC transporter B family member 1 996 1253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04092 Trre-Chr5 42515388 42521869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04092 36 631 Calmodulin-binding Proteins AT2G36910 34.603 1.76e-96 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04092 K05658 - zju:107414909 1797.71