Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04077 ATGGGTTCTCTTGAGTGTGTTCCATCGCTTGATCATGGGATGGCGGTGTTACCTTTAAATTCGCTTCCGTTAGGGTTCCGATTTCGACCTTCCGATGAAGAACTCGTTGATTACTATCTACGTTCTAAGATCAATGGAAATGGTGATGAGGTTTGGGTTATACGAGAAATTGATATCTGCAAATGGGAACCATGGGATATGCCTGGTTTGTCAGTGATAAGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCACAGGATCGAAAGTATCCAAACGGGCATCGATTGAACAGAGCGACAACTCACGGGTATTGGAAAGCAACGGGAAAGGATCGTAGAATCAAGTCCGGAAACATCTTGATTGGAATGAAGAAGACTCTAGTTTTCTACAGTGGTCGTGCACCTAAAGGGAAGAGGACTAATTGGGTTATGCACGAGTATCGTCCCACACTGAAGGAGCTTGATGGTACCAACCCAGGACAGAATCCATATGTCCTCTGTCGGTTATTTAAGAAAAACGATGAGAGCCTTGAAGTTTCAAACTGTGGTGAAGTGGAGCAAGCTACTTCAGCTCCTCTAGCTGCCAATTACTCTCCTGAAGAAATACAATCTGATCAAGCTCCTATTACGGCATCCACATCACAGGTCACAGAAGAGGATAAACAGCTGCCCTTTATCCCCGATGTCTCTGAGGAAACCATATCTAATGTTATAACCTCGGTCGATTGCCATAGTGATGGATATGATGCTCATGATGCCCAAAATCAAACTGTTAAACTAGCTGCAGAGGAGGATCAGACGTCAATCTTGGACATGTATTATAACCCGAAAGACGGTCTATTATTAGATGACAGATTATTCTCCCCAGTTTTGAGGCACATGCCACAAGAATTTAATTATCAAGCAAACAATGAATCAGATGGTCAATGTGGGCTTCAATATGGTACAAATGAGATAAACATTTCGGACTTTTTAAATTATAATCTTAATTGGGATCAACTTCCTTGTGCGGAGTTCACTAGTCACCAACAGAACTTCTCCTTGTTTAATGTTAAAGACAATGGTTCTGGAAGTGAATCAGAAGCGGGTTCCAATATGACTTGTATGCAAGCTGCTTATCCTCAAGAAGCAATTGACAGAGGGTTTCCTTTTGCGATACCACCATCAATTAGCACCTTTGACCATAGTAGTGATGATCAAAAGAGCAACGTTGTACCATTGCAAAACAATTTCCAGACATCTTATTCATCGGATGTTAATTTTGGTGAAGTGTGCAATGTTGTCAATGGTTATGATCAACCAAGTAACTATAATAATACAGTTTTGCCTGCTGAGAGTGGAATCATTAGAAGGGCCAGACCGGCACGAGAGGAACAATTGAAGACAAATCATATGCAAGGTAATGCTCAAAGGAGAATTCGTTTGAAGGTTGAACATGTCGCAAATGGGAGTTGTACAGAAGAACAGCATAATTCAAAACCAAACATCGCAGTGGAGAAGAAAGCTGCAGAAAATCATGCTGCCGATGCTGAAAGTGCCAGTCGTACTAGTCACGCGTATAAACAGCGGAAGGCATCCAAGTCAATTGACAATAGAAAGATTTCTCAGAAAGTTGCAAATGGAGGGGGGCTAAGAGACTTTTTATCTGTAGGAAGGGTGCCTTTCAGATCAAAGACTTCCTCAAACCGTGTCGCCTTGTGGTCTTCGGTTTTTGTAGTTTCTGCATCTGTACTGGTTTCATTAGCAGCCTTTACTAACATATGGGAATATATTAAATTTTGA 1782 0.4169 MGSLECVPSLDHGMAVLPLNSLPLGFRFRPSDEELVDYYLRSKINGNGDEVWVIREIDICKWEPWDMPGLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATTHGYWKATGKDRRIKSGNILIGMKKTLVFYSGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKNDESLEVSNCGEVEQATSAPLAANYSPEEIQSDQAPITASTSQVTEEDKQLPFIPDVSEETISNVITSVDCHSDGYDAHDAQNQTVKLAAEEDQTSILDMYYNPKDGLLLDDRLFSPVLRHMPQEFNYQANNESDGQCGLQYGTNEINISDFLNYNLNWDQLPCAEFTSHQQNFSLFNVKDNGSGSESEAGSNMTCMQAAYPQEAIDRGFPFAIPPSISTFDHSSDDQKSNVVPLQNNFQTSYSSDVNFGEVCNVVNGYDQPSNYNNTVLPAESGIIRRARPAREEQLKTNHMQGNAQRRIRLKVEHVANGSCTEEQHNSKPNIAVEKKAAENHAADAESASRTSHAYKQRKASKSIDNRKISQKVANGGGLRDFLSVGRVPFRSKTSSNRVALWSSVFVVSASVLVSLAAFTNIWEYIKF 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04077 593 SUPERFAMILY NAC domain 12 172 IPR036093 GO:0003677|GO:0006355
Trre5g04077 593 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Trre5g04077 593 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 258 - -
Trre5g04077 593 MobiDBLite consensus disorder prediction 502 528 - -
Trre5g04077 593 FunFam Nac domain-containing protein 86 31 175 - -
Trre5g04077 593 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
Trre5g04077 593 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04077 Trre-Chr5 42368015 42370803 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04077 5 213 NAC Transcription Factor Family AT1G33060 61.905 1.87e-90 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre5g04077 NAM 5.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04077 - - gmx:100777071 673.315