Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04074 ATGGGTTCCCCTTCTCTTGAGTGTTGTCCATCGCTCGACGATAATGGGATGGTGGTGTTGAATCTGAATTTGTTTCCAGTAGGGGTCCGATTCCAACCTACGGACGAGGATCTTATCAATTACTACCTACGTTCAAAGATCAATGGTAATGGTGACAAGGTTTGGGTTATCCGAGAAATTGATATCTGCAAATGGGAACCCTGGGATATGCCCGATTTGTCAGTGGTAAAGAGCAAGGATCAAGAGTGGTTCTTCTTCTGTCCTCAGGATCGAAAGTATCCAAAAGGGCATCAAATGAATAGAAAAACAAATTGTGGGTTCTGGAAGGCAACGGGAAAGGATCGTACAATTATGTCTGAAGCAATCTTGATTGGAATGAAGAAGACTCTAGTTTTCTACAGTGGTCATGCACCAAATGGGAAGAGGACTAATTGGGTTATGCACGAGTATCGTCCCACCCTGAATGAGCTTGATGGTACCAACCCTGGACAGAAGCCATATGTCCTCTGTCGATTATTTAAGAAAAATGATGACAGCCTTGAAGTTTCAAACCGTGGTTGTGGTGAAGTGGAGCAGACTACTTCAGCTCCTTTGGCTGCCAACTATTCTTCTGAAGATATACAGTCTGTTCCAGCTCCTGTTATAGTATCCCCACCACAGGTCATGGAAGAGGATGTGCAGCTGGCCGTTGTCCCTGATGTTTCTGGGGAAGCTCCTTTGGCTGCCAATCATTCTTCTGAAGAAAGACAATCAGATCCAGCTCCTGTTACAGCATCCACATCCCAGGTCATGGAAGAGGATGTGCAGCTGGCCGTTATCCCTGATGTCTCTGGGGAAACCATATCTACAGAGGAGGATCAGACATTGAACTTTGGCATGTATTATAACCCAATAGACGGTCAATTATTTGATGACAGATTTTTCTCCCCCGATCTGGCGCATATGCCGCCAGAATTTAATTATCAAGCATATAATGAGTCAGACCGTCTATGGGAGCTTCAATATGGAAGCAACTCAGTTGCTGGACCCAAAATGACTTGTATGACTGCTGAAACACGAGACGTACAATTGAAGACAAATCCAATGAAAGGTACTGCTCAAAGGAAAATTCGTTTCTCAAAGATTGAACATTGCTCAAATGGAAATTGTACACAAGAACAGCATTGGTCAATTGACAATAGAAAGATTTTTCAGGATGTTGCAAATGCAGGGGTATTAAGAGACTTTTTATTTGTAGGAAGGGTGCCTTTCAGATCAAATACTTCCTCAGCCACACCACCTTGTGGTCTTCTGTTTTTGTAG 1302 0.4347 MGSPSLECCPSLDDNGMVVLNLNLFPVGVRFQPTDEDLINYYLRSKINGNGDKVWVIREIDICKWEPWDMPDLSVVKSKDQEWFFFCPQDRKYPKGHQMNRKTNCGFWKATGKDRTIMSEAILIGMKKTLVFYSGHAPNGKRTNWVMHEYRPTLNELDGTNPGQKPYVLCRLFKKNDDSLEVSNRGCGEVEQTTSAPLAANYSSEDIQSVPAPVIVSPPQVMEEDVQLAVVPDVSGEAPLAANHSSEERQSDPAPVTASTSQVMEEDVQLAVIPDVSGETISTEEDQTLNFGMYYNPIDGQLFDDRFFSPDLAHMPPEFNYQAYNESDRLWELQYGSNSVAGPKMTCMTAETRDVQLKTNPMKGTAQRKIRFSKIEHCSNGNCTQEQHWSIDNRKIFQDVANAGVLRDFLFVGRVPFRSNTSSATPPCGLLFL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04074 433 Gene3D NAC domain 34 179 IPR036093 GO:0003677|GO:0006355
Trre5g04074 433 Pfam No apical meristem (NAM) protein 26 151 IPR003441 GO:0003677|GO:0006355
Trre5g04074 433 SUPERFAMILY NAC domain 13 175 IPR036093 GO:0003677|GO:0006355
Trre5g04074 433 MobiDBLite consensus disorder prediction 244 263 - -
Trre5g04074 433 MobiDBLite consensus disorder prediction 240 263 - -
Trre5g04074 433 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 26 253 - -
Trre5g04074 433 ProSiteProfiles NAC domain profile. 25 175 IPR003441 GO:0003677|GO:0006355
Trre5g04074 433 FunFam Nac domain-containing protein 86 34 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04074 Trre-Chr5 42360574 42363051 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04074 18 282 NAC Transcription Factor Family AT1G33060 48.736 2.30e-82 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre5g04074 NAM 1.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04074 - - gmx:100777071 384.03