Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04073 ATGGGTTCCCCTTCTCTTGAGTGTTGTCCATCGCTCGACGATAATGGGATGGTGGTGTTGAATCTGAATTTGTTTCCAGTAGGGGTCCGATTCCAACCTACGGACGAGGATCTTATCAATTACTACCTACGTTCAAAGATCAATGGTAATGGTGACAAGGTTTGGGTTATCCGAGAAATTGATATCTGCAAATGGGAACCCTGGGATATGCCCGATTTGTCAGTGGTAAAGAGCAAGGATCAAGAGTGGTTCTTCTTCTGTCCTCAGGATCGAAAGTATCCAAAAGGGCATCAAATGAATAGAAAAACAAATTGTGGGTTCTGGAAGGCAACGGGAAAGGATCGTACAATTATGTCTGAAGCAATCTTGATTGGAATGAAGAAGACTCTAGTTTTCTACAGTGGTCATGCACCAAATGGGAAGAGGACTAATTGGGTTATGCACGAGTATCGTCCCACCCTGAATGAGCTTGATGGTACCAACCCTGGACAGAAGCCATATGTCCTCTGTCGATTATTTAAGAAAAATGATGACAGCCTTGAAGTTTCAAACCGTGGTTGTGGTGAAGTGGAGCAGACTACTTCAGCTCCTTTGGCTGCCAACTATTCTTCTGAAGATATACAGTCTGTTCCAGCTCCTGTTATAGTATCCCCACCACAGGTCATGGAAGAGGATGTGCAGCTGGCCGTTGTCCCTGATGTTTCTGGGGAAGCTCCTTTGGCTGCCAATCATTCTTCTGAAGAAAGACAATCAGATCCAGCTCCTGTTACAGCATCCACATCCCAGGTCATGGAAGAGGATGTGCAGCTGGCCGTTATCCCTGATGTCTCTGGGGAAACCATATCTACAGAGGAGGATCAGACATTGAACTTTGGCATGTATTATAACCCAATAGACGGTCAATTATTTGATGACAGATTTTTCTCCCCCGATCTGGCGCATATGCCGCCAGAATTTAATTATCAAGCATATAATGAGTCAGACCGTCTATGGGAGCTTCAATATGGAAGCAACTCAGTTGCTGGACCCAAAATGACTTGTATGACTGCTGAAACACGAGACGTACAATTGAAGACAAATCCAATGAAAGGATGTTGCAAATGCAGGGGTATTAAGAGACTTTTTATTTGTAGGAAGGGTGCCTTTCAGATCAAATACTTCCTCAGCCACACCACCTTGTGGTCTTCTGTTTTTGTAGCTTCTGCTGTTCTAGTTTCTTTTGTAGCATTTACCAACATGAGAATACAATTTTGA 1254 0.4378 MGSPSLECCPSLDDNGMVVLNLNLFPVGVRFQPTDEDLINYYLRSKINGNGDKVWVIREIDICKWEPWDMPDLSVVKSKDQEWFFFCPQDRKYPKGHQMNRKTNCGFWKATGKDRTIMSEAILIGMKKTLVFYSGHAPNGKRTNWVMHEYRPTLNELDGTNPGQKPYVLCRLFKKNDDSLEVSNRGCGEVEQTTSAPLAANYSSEDIQSVPAPVIVSPPQVMEEDVQLAVVPDVSGEAPLAANHSSEERQSDPAPVTASTSQVMEEDVQLAVIPDVSGETISTEEDQTLNFGMYYNPIDGQLFDDRFFSPDLAHMPPEFNYQAYNESDRLWELQYGSNSVAGPKMTCMTAETRDVQLKTNPMKGCCKCRGIKRLFICRKGAFQIKYFLSHTTLWSSVFVASAVLVSFVAFTNMRIQF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04073 417 MobiDBLite consensus disorder prediction 244 263 - -
Trre5g04073 417 Gene3D NAC domain 34 179 IPR036093 GO:0003677|GO:0006355
Trre5g04073 417 SUPERFAMILY NAC domain 13 175 IPR036093 GO:0003677|GO:0006355
Trre5g04073 417 MobiDBLite consensus disorder prediction 240 263 - -
Trre5g04073 417 Pfam No apical meristem (NAM) protein 26 151 IPR003441 GO:0003677|GO:0006355
Trre5g04073 417 FunFam Nac domain-containing protein 86 34 178 - -
Trre5g04073 417 ProSiteProfiles NAC domain profile. 25 175 IPR003441 GO:0003677|GO:0006355
Trre5g04073 417 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 26 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04073 Trre-Chr5 42360518 42363051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04073 18 282 NAC Transcription Factor Family AT1G33060 48.736 1.26e-82 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre5g04073 NAM 1.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04073 - - gmx:100777071 384.03