Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04053 ATGGGTTCAACAGGTGAAACTCAAATAACACCAACCCATGTTAATGATGAAGAAGCAAACCTCTTTGCTATGCAATTAGCAAGTGCTTCTGTTCTTCCAATGATTTTAAAATCAGCTCTTGAACTTGATCTCTTAGAAATCATTGCTAAAGCTGGTCCTGGTGCTCATCTTTCACCTGTCGATATTGCTTCTCAGCTTCCTACTACTAATCCTGATGCACCAGTTATGTTGGATAGAATCTTGCGTTTATTGGCTTGTTATAATATTCTTACTTGCAATTTAAGGACTTTAGATGATGGAAAAGTTCAGAGACTCTATGGTTTGGCTACTGTTGCTAAGTATTTGGTTAAGAATGAAGATGGTGTTTCTATTTCTGCTCTTAATCTCATGAATCAAGATAAAGTACTCATGGAAAGCTGGTACCACCTAAAAGATGCTGTCCTTGATGGAGGCATTCCATTCAACAAAGCTTATGGAATGACAGCCTTTGAATACCATGGAACAGATCCAAGGTTTAACAAAGTTTTCAACAAGGGAATGTCTGATCACTCTACCATTACAATGAAGAAAATTCTTGAAACCTACAAAGGTTTTGAAGGCCTTAAATCTCTTGTTGATGTTGGTGGTGGAACTGGAGCTGTAATCAATACCATTGTCTCTAAGTATCCTACTATTAAAGGCATTAATTTTGATTTACCTCATGTTATTGAAGATGCTCCTTCTTATCCAGGAGTGGAACATGTTGGTGGAGACATGTTTGTCAGTGTTCCAAAGGCTGATGCTGTGTTTATGAAGTGGATTTGTCATGATTGGAGTGATGCACACTGCTTGAAATTTTTGAAGAACTGTTATGAGGCACTTCCAGACAATGGAAAAGTGATTGTGGCAGAATGCATTCTACCAGTGGCACCAGACACAAGCTTAGCAACAAAAGGTGTGGTTCACATTGATGTGATCATGTTGGCTCATAATCCAGGTGGGAAAGAGAGAACACAAAAAGAGTTTGAAGATCTTGCCAAAGGTGCTGGATTCAAAGGTTTCAAAGTCCATTGTTCTGCTTTCAACACATACATCATGGAATTTCTTAAGGTTTAA 1095 0.3826 MGSTGETQITPTHVNDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAHLSPVDIASQLPTTNPDAPVMLDRILRLLACYNILTCNLRTLDDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKADAVFMKWICHDWSDAHCLKFLKNCYEALPDNGKVIVAECILPVAPDTSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFKGFKVHCSAFNTYIMEFLKV 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04053 364 CDD AdoMet_MTases 204 295 - -
Trre5g04053 364 Gene3D Vaccinia Virus protein VP39 116 363 IPR029063 -
Trre5g04053 364 FunFam Caffeic acid 3-O-methyltransferase 3 115 - -
Trre5g04053 364 PIRSF O-mtase 1 363 IPR016461 GO:0008168
Trre5g04053 364 Gene3D - 1 115 IPR036388 -
Trre5g04053 364 PANTHER O-METHYLTRANSFERASE 23 346 IPR016461 GO:0008168
Trre5g04053 364 Pfam O-methyltransferase domain 140 345 IPR001077 GO:0008171
Trre5g04053 364 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 363 IPR016461 GO:0008168
Trre5g04053 364 SUPERFAMILY "Winged helix" DNA-binding domain 15 119 IPR036390 -
Trre5g04053 364 FunFam Caffeic acid O-methyltransferase 116 363 - -
Trre5g04053 364 Pfam Dimerisation domain 34 85 IPR012967 GO:0046983
Trre5g04053 364 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 121 361 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04053 Trre-Chr5 42103651 42109387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04053 1 363 Monolignol Biosynthesis Gene Families AT5G54160 77.686 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04053 K13066 - gmx:100780100 679.863