Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04037 ATGAGTAGTCGCTTTTCTCGCACGATCTATGTTGGTAACCTGCCCTCTGATATAAGAGAATCCGAAATTGAAGATTTGTTCTACAAGTATGGCCGCATCATGGAAATTGAATTGAAGGTTCCTCCTCGCCCTCCGTGTTATTGTTTTGTTGAGTTTGACAATGCACGAGATGCGGAAGATGCAATTCGGGGACGGGATGGTTACAATTTTGATGGATGTCGATTAAGGGTGGAGCTTGCCCATGGAGGTAGAGGGCCATCATCAAGTGATCGACGTGGGTATGGAGGTGGTGATGGTGGAGGCCGTGGCGGCGGTGGTGCTGGTGGGGGCCGTTTTGGTGTCTCACGCCATTCTGAATTTCGAGTTATTGTCCGTGGGCTCCCATCTTCTGCGTCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAAGTTTCCCGTGATAGTGAAGGGACTTTTGGCCTTGTTGATTACACTAATTATGATGACATGAAATATGCTATTCGGAAACTGGATGATACTGAGTTTAGAAATCCTTGGGCGAGATCATATATTCGGGTGAGGAAGTACGAGAGCAGTCGTTCAAGGAGCCGCAGCAGAAGCCCCAGCAGGAGCAGGAGCAGGAGCAGAAGTCCGAAAAGGGCTAGAAGTAGGTCTTTGGAGCGATCTTTGTCTAGGTCACGATCTATTTCCAGGTCAAGGTCCAGGTCCAGATCCAGATCAGCATCACCAATCAAGCCTTCCAGGCCAAGATCACGATCACGTTCAGCATCTCCACGATCACCACCACGCCAGGTGGATCTCCGAAACTCCAGCACTATTCTGGGAAGTATTGGAATTATGGTTGAGGATATTTGA 876 0.484 MSSRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGDGGGRGGGGAGGGRFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYDDMKYAIRKLDDTEFRNPWARSYIRVRKYESSRSRSRSRSPSRSRSRSRSPKRARSRSLERSLSRSRSISRSRSRSRSRSASPIKPSRPRSRSRSASPRSPPRQVDLRNSSTILGSIGIMVEDI 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04037 291 Gene3D - 2 117 IPR012677 -
Trre5g04037 291 MobiDBLite consensus disorder prediction 242 278 - -
Trre5g04037 291 FunFam serine/arginine-rich splicing factor SR34A-like 2 119 - -
Trre5g04037 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 184 IPR000504 GO:0003723
Trre5g04037 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Trre5g04037 291 SUPERFAMILY RNA-binding domain, RBD 6 187 IPR035979 GO:0003676
Trre5g04037 291 MobiDBLite consensus disorder prediction 205 219 - -
Trre5g04037 291 CDD RRM2_SF2_plant_like 120 195 - -
Trre5g04037 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Trre5g04037 291 SMART rrm1_1 121 194 IPR000504 GO:0003723
Trre5g04037 291 SMART rrm1_1 8 78 IPR000504 GO:0003723
Trre5g04037 291 MobiDBLite consensus disorder prediction 197 278 - -
Trre5g04037 291 MobiDBLite consensus disorder prediction 220 234 - -
Trre5g04037 291 MobiDBLite consensus disorder prediction 81 110 - -
Trre5g04037 291 Gene3D - 120 197 IPR012677 -
Trre5g04037 291 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 268 - -
Trre5g04037 291 FunFam serine/arginine-rich splicing factor SR34A-like 120 197 - -
Trre5g04037 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04037 Trre-Chr5 41767471 41771111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04037 2 204 Eukaryotic Initiation Factors Gene Family AT4G34110 24.057 4.72e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04037 K12890 - gmx:100786491 344.354