Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04030 ATGGCGCTAGCAGCACTATCCTTTTTCTCAAATCCTCCATCTTCTTCTTGTTCTTCTATAACAACCTTTCATTCCTACCCATCAAACCCTTCACATTCTCTTCAACCCTCAACATTCTTCCCTCTTCTTCAAACTCAACCTTCCTTTTCCCTCCCCACCAAATCACACCCACCAAACAACGACTTTTTCCGCTTCCGTTTTCGACCCTCCATTCACTCATTCTTCCACTGCCACTGCCACTGCAGTAGCAACGCCCCCAATGTCGATTTCCAATTCGGGACACTTATCTCTTTATTTCAAGAAATTGGTATTAGCTTTGATGAAACCAAATTGTTCTTGCTCATTTCCAATAAACTTACCTCTACACAACTTGATTCATTGCGTGATCGTGTTCTTTCTTTACACTCTCTCGGGTTAGACCGTGTTTCAATCAATCATTTAGTTAAGGAGCGTTTAACTGTGTTAACTACTAATGAAATTGACCCATTGTTGATTTTTTTGAGTAATGAATTACATGGGCAACTTGAGCAACCAAAGCTCAAGCGCCTTTTATTGAGTAATGAACCAAAAAATTTATCCGCGTTTCCTCAGAAGGTTCGATTGCTTGTTAACCGAGGAGTTCCGGTTGATAAGATTGTGCGTGTGCTTAACAAAGTGAATTTGTCAAAGGCAATTTGTATTAGGTCAATAGATGAAATTGAAAGAATTATAGATTTCTTAGAACCCTTTGGTGGTGTTGATTTGATTGTGAAACACCCTGCAATTCTCAATTATTGTTTGGATAATAAGCTTATTCCTAGAATTAGAGTTCTTACCGAGTTAAGTGGTGGAGACGAGGATGGTATTAGGAAAGTGTTGAATAGGTTTCCTTTAATCTTGAATTATAGCGTGGAACATGTAGAGGAACATTTACAGTTTCTGAGGTCATTTGCAGACCTTGATGATGAACAAATATTTAAGATAGTGTTGGTGTTTCCAGCTATCTTTACTAATAACAGAGAGAGGAAACTGCGTCCTAGAATACAATTTCTCAAGGAATGTGGGTTAGACTCTAGCGATATCTTCAAGTTCTTGATCAAAGCACCGTTGTTTTTGAGCGTTTCGTTTCGCGAGAACCTTGCGTATAAGTTTGTGTTTCTGGTTAAGATTGGGTATAAATATAGGACGAAAGAGTTCGCAGTGGCGATTGCGGCTTCAACTAGACTAAGCTGCGAGAATATGCAGAAGCTGGTGAGTTTATTCTTGAATTACGGCTTTTCATTTGAAGACATTTTTGCTATGACTATGAAGCAGCCATTGATACTGCGATATAATCATGTCTCTGTAGAGAAGAAGATGAAGTACTTGATAGAGGAAATGAATCGCGACATTCGTGAGTTGCTGGATTTTCCTGCATTTCTTGGGTACACGTTTGATGACAGAATTAAGCATAGGCATGAAATAGAGAAGGGTTTAAAAGGGGGACAAATGTCTCTCAATCAGCTTTTAAGTGTTTCAAGCAAGAACTTCACCGGCAAACGAAAAAAGGATTCTTCTGTAAAATCTGAACTAAAATAA 1557 0.3866 MALAALSFFSNPPSSSCSSITTFHSYPSNPSHSLQPSTFFPLLQTQPSFSLPTKSHPPNNDFFRFRFRPSIHSFFHCHCHCSSNAPNVDFQFGTLISLFQEIGISFDETKLFLLISNKLTSTQLDSLRDRVLSLHSLGLDRVSINHLVKERLTVLTTNEIDPLLIFLSNELHGQLEQPKLKRLLLSNEPKNLSAFPQKVRLLVNRGVPVDKIVRVLNKVNLSKAICIRSIDEIERIIDFLEPFGGVDLIVKHPAILNYCLDNKLIPRIRVLTELSGGDEDGIRKVLNRFPLILNYSVEHVEEHLQFLRSFADLDDEQIFKIVLVFPAIFTNNRERKLRPRIQFLKECGLDSSDIFKFLIKAPLFLSVSFRENLAYKFVFLVKIGYKYRTKEFAVAIAASTRLSCENMQKLVSLFLNYGFSFEDIFAMTMKQPLILRYNHVSVEKKMKYLIEEMNRDIRELLDFPAFLGYTFDDRIKHRHEIEKGLKGGQMSLNQLLSVSSKNFTGKRKKDSSVKSELK 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04030 518 Gene3D Transcription termination factor 3, mitochondrial 277 512 IPR038538 -
Trre5g04030 518 Gene3D Transcription termination factor 3, mitochondrial 86 276 IPR038538 -
Trre5g04030 518 PANTHER CGI-12 PROTEIN-RELATED 85 275 IPR003690 GO:0003690|GO:0006355
Trre5g04030 518 Pfam mTERF 338 503 IPR003690 GO:0003690|GO:0006355
Trre5g04030 518 Pfam mTERF 129 382 IPR003690 GO:0003690|GO:0006355
Trre5g04030 518 SMART mt_12 425 456 IPR003690 GO:0003690|GO:0006355
Trre5g04030 518 SMART mt_12 355 386 IPR003690 GO:0003690|GO:0006355
Trre5g04030 518 SMART mt_12 319 350 IPR003690 GO:0003690|GO:0006355
Trre5g04030 518 SMART mt_12 246 277 IPR003690 GO:0003690|GO:0006355
Trre5g04030 518 SMART mt_12 283 314 IPR003690 GO:0003690|GO:0006355
Trre5g04030 518 SMART mt_12 457 488 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04030 Trre-Chr5 41644786 41646422 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre5g04030 mTERF 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04030 - - gmx:100799904 548.125