Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04017 ATGGGTCATGTTGTAATAACTAGTGGTGAGAAATTGGTGAGAGTTGAAGAAGAAGAGAAGAAGCTGAGGGAAGAAGAAGAAAGTGGAACTGAGAGTAGAGGTGGTGGTGGTGGAGAAATGAAAGGGCTTTTGAGGTGGGAGAAATTTTTGCCAAAGATGGTTTTAAGAGTGCTTTTGGTTGAAGCTGATGATTGTACAAGACAGATTATAACAGCACTTCTCAGAAAATGTAACTATAAAGTTGCTGCTGTTGCTGATGGCTTGAAGGCATGGGAAATAATGAAGGGAAGGCCGCGCAATTTCGATCTAATACTTACAGAAGTCGATTTGCCATCCATATCTGGCTATGCACTTCTCACCTTAATCATGGAGCATGATATTTGCAAAAACATCCCTGTCATAATGATGTCGTCTCAAGATTCAGTTAGCACAGTATACAAATGCATGTGTAGAGGTGCAGCTGACTATCTCGTTAAACCGATTCGAATAAATGAATTGCGGAATTTGTGGCAGCATGTTTGGAGAAGACAATCGTTAACCGCAAACGCTGGCATAAATGGTCCCCAAGATGAAACCGATACACAACAGAAAGTTGAAGCCACTGCTGAAAACAATGCTGCTGGTTATCGTTCTAGTGGCGAAGCTGCTTGCATTCAAATAAATAAGGACTTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACAAAGCCAAACATGGAAGCTGAGAGTGGCCTGGTTGATAATATGCAGGAATTTTCTCAGCTGAAATGTGCGGACGCATATCCAAGTGAAACAAAGACACAGGATGTTGACATTCATTTAGGCCAGGCATTGATCACGCAGGACAGTCGCACTGGAGGATTATGTGCGGCTAACTGCAACAATGGAGAGACAAACACAAATAATGGAAATGATGGTGAGGATCAAGAGCACTTTAGGATTGCTAGTACCAGTGGTGAGGATCATGACAATCACTATGTTGAAATTAACTCTACTAAGGAAGCTATTGACTTGATTGGAGCATTCCGTACTCATCCGAATTGCAGTCTCAAAAGTTCATCAATCGATTGCACAGGAAAGTTTGACGATTCTCCACAACTGGATCTTTCTCTGAGAAGCTCTCATCCCAGCAGCTTAGAGAAGGAAATCACTGAAGAGAGACACACCCTTATGCATTCTAATGCTTCAGCTTTCAAGCGGTATACTAACAGGCAATTGCAAGCATCGGCCACAGTAGTAATTAACTTCACTGATCAACAAAGAGAACAAAAAACAAATAATGAGAACCTTAACTCAGAAAGTTCGATACCAAGTATGCAAAAATGTAATATGTCTCTAGGTACATCCCAATCAAAAGAATCCGAACTCGCAACTTCACAATCCCAGCAAGGGCATTCTCTCCCAATTCCTGTAAAAGGTGTGAGGTTCAATGATCTATGTGTGACCTATGGTTCGACGCTTTCACCAGGGTTTCGTACTCAGTCTGGTCCACCATCAATGCCAGGTTCTGTTGTGTTTCTCGAACAAAGCTTTCAAGCAGATGCATTTTATCAGTCAAATGTTAAAGAAAATAATAATAATTCAGAACAGATTTATAAACCTCGTGGTCTGAATGGAAACAGCACTCCAAACCAAATGGTGTACACACAGGAACACAAATCAGAACATGGAGAGGATCAAAGACTTATCTCCCCTACCACTGATCAAAGTGTATCGAGTAGTTTCTGTAATAATGGAAGTGCAAGCCATCTTAACAGCATTGGTTATGGAAGTAATTGCGGAAGTAGCAGCAATGTCGAACAAGTTACAACTTTCAGGACATCAGTAGTTTCAGATGGTAAGAATGAAGACCTCATAAACGGTGGACATTCGCATCGATCTATCCTACGAGAAGCAGCTCTAAACAAGTTCCGCTTGAAACGGAAAGAGAGATGTTACGAAAAGAAGGTTCGATACGAGAGCAGGAAGAAACTAGCAGAACAGCGTCCTCGAGTTAAAGGACAATTTGTTCGCCAAATGAATCCCGATCCTCTTTCGGCAGAGAAAGATTGCTAA 2058 0.415 MGHVVITSGEKLVRVEEEEKKLREEEESGTESRGGGGGEMKGLLRWEKFLPKMVLRVLLVEADDCTRQIITALLRKCNYKVAAVADGLKAWEIMKGRPRNFDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSSQDSVSTVYKCMCRGAADYLVKPIRINELRNLWQHVWRRQSLTANAGINGPQDETDTQQKVEATAENNAAGYRSSGEAACIQINKDLIEKGSDAQSSCTKPNMEAESGLVDNMQEFSQLKCADAYPSETKTQDVDIHLGQALITQDSRTGGLCAANCNNGETNTNNGNDGEDQEHFRIASTSGEDHDNHYVEINSTKEAIDLIGAFRTHPNCSLKSSSIDCTGKFDDSPQLDLSLRSSHPSSLEKEITEERHTLMHSNASAFKRYTNRQLQASATVVINFTDQQREQKTNNENLNSESSIPSMQKCNMSLGTSQSKESELATSQSQQGHSLPIPVKGVRFNDLCVTYGSTLSPGFRTQSGPPSMPGSVVFLEQSFQADAFYQSNVKENNNNSEQIYKPRGLNGNSTPNQMVYTQEHKSEHGEDQRLISPTTDQSVSSSFCNNGSASHLNSIGYGSNCGSSSNVEQVTTFRTSVVSDGKNEDLINGGHSHRSILREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQMNPDPLSAEKDC 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04017 685 CDD psREC_PRR 57 160 - -
Trre5g04017 685 Pfam Response regulator receiver domain 57 168 IPR001789 GO:0000160
Trre5g04017 685 PANTHER TWO-COMPONENT RESPONSE REGULATOR 55 272 IPR045279 GO:0009736
Trre5g04017 685 Gene3D - 53 279 - -
Trre5g04017 685 SMART REC_2 55 170 IPR001789 GO:0000160
Trre5g04017 685 ProSiteProfiles Response regulatory domain profile. 56 174 IPR001789 GO:0000160
Trre5g04017 685 Pfam CCT motif 631 673 IPR010402 GO:0005515
Trre5g04017 685 ProSiteProfiles CCT domain profile. 631 673 IPR010402 GO:0005515
Trre5g04017 685 MobiDBLite consensus disorder prediction 657 685 - -
Trre5g04017 685 MobiDBLite consensus disorder prediction 17 32 - -
Trre5g04017 685 MobiDBLite consensus disorder prediction 418 467 - -
Trre5g04017 685 MobiDBLite consensus disorder prediction 17 39 - -
Trre5g04017 685 SUPERFAMILY CheY-like 55 182 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04017 Trre-Chr5 41490432 41493718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04017 615 674 Response Regulator Gene Family AT5G24470 72.581 2.45e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Trre5g04017 Response_reg 2.3e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04017 K12130 - gmx:100777119 905.205