LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g04005	ATGGCTGTAGCTGAGAATGTTGGAACCAAAATCGATTCTCCGACTGAGAATTTGGACAACACTGTTGTTTCATCGGACTCAACTGAGGTTGAGAAATCGAAACCAAAAACCGATCAGAATCTGAACAACAACAGTAACAACAACGGTGTGATCAATCATCAACAACAACAAGACAGTGTTCCCACCGCTGCTATGACTGTTCCTAATGGTAACCATGGTTTCAAGACTCATCAAATGGGTCAGATGCATGGTAATGGGGTTCAGAATCAGCCACAGTTTGTGGTGAACAATGATGGGTATGTGATGAATGGAAATGGGGGTGAGAGTTTCAAGCGTGAAATGAGGGATTTGGAAGAGTTGCTGTCAAAGCTGAATCCTATGGCTGAGGAATTTGTTCCTCCTTCATTGGTCACTAATTATCATGGTTACTTAGCTGCTGGACCTAATGCTGGCTTTGGTTACCCTAACAATTTTATGATTCAGAATAATTTTGGTAATGCTAATGGACAGATTAACAGAAGGAGGAAGAGTGGCTATAATAATGCGAAGCGAAGAGGGAACAACTATAAGATGGATATGGAGAAAAGAGAAGAGATGATTAAGAGGACTGTTTATGTGTCTGACATTGATCAACTGGTCACTGAAGAGCAGCTGGCGGCTCTCTTTCTTAACTGCGGCCAGGTTGTGGATTGTCGTGTATGTGGGGATCCCAATTCCATTCTCCGGTTTGCTTTCGTTGAGTTTACTGATGAAGTTGGTGCTAGGACTGCTTTGAACCTGTCTGGAACCATGCTCGGGTATTACCCATTGAGAGTGCTGCCTTCAAAGACTGCCATTGCACCTGTTAACCCAACATTTTTGCCCAGGTCTGAAGATGAAAGAGAGATGTGCACTAGAACAATTTATTGCACAAATATCGACAAGAAGCTGACTCAAGCTGATGTCAAAAACTTCTTTGAATCTATCTGTGGAGAGGTTCAGCGCCTGAGGATTCTTGGGGATTACCATCACTCAACTCGAATTGCTTTTGTGGAGTTCACAGTGGCTGAAAGTGCAATTGCAGCACTGAGCTGTAGCGGTGTGGTTTTGGGTTCACTACCTATAAGGGTTAGTCCATCCAAGACACCAGTCCGTGCTCGTGCAAATCGTGCTCCCATGCACTGA	1164	0.439	MAVAENVGTKIDSPTENLDNTVVSSDSTEVEKSKPKTDQNLNNNSNNNGVINHQQQQDSVPTAAMTVPNGNHGFKTHQMGQMHGNGVQNQPQFVVNNDGYVMNGNGGESFKREMRDLEELLSKLNPMAEEFVPPSLVTNYHGYLAAGPNAGFGYPNNFMIQNNFGNANGQINRRRKSGYNNAKRRGNNYKMDMEKREEMIKRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEVGARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCTRTIYCTNIDKKLTQADVKNFFESICGEVQRLRILGDYHHSTRIAFVEFTVAESAIAALSCSGVVLGSLPIRVSPSKTPVRARANRAPMH	387

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g04005	387	MobiDBLite	consensus disorder prediction	37	68	-	-
	Trre5g04005	387	SMART	rrm1_1	203	273	IPR000504	GO:0003723
	Trre5g04005	387	SMART	rrm1_1	300	371	IPR000504	GO:0003723
	Trre5g04005	387	SUPERFAMILY	RNA-binding domain, RBD	165	275	IPR035979	GO:0003676
	Trre5g04005	387	CDD	RRM2_CID8_like	295	376	IPR034825	-
	Trre5g04005	387	MobiDBLite	consensus disorder prediction	1	68	-	-
	Trre5g04005	387	CDD	RRM1_CID8_like	200	279	IPR034823	-
	Trre5g04005	387	MobiDBLite	consensus disorder prediction	10	28	-	-
	Trre5g04005	387	FunFam	Polyadenylate-binding protein-interacting protein 11	165	279	-	-
	Trre5g04005	387	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	204	267	IPR000504	GO:0003723
	Trre5g04005	387	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	301	368	IPR000504	GO:0003723
	Trre5g04005	387	Gene3D	-	163	279	IPR012677	-
	Trre5g04005	387	Gene3D	-	286	383	IPR012677	-
	Trre5g04005	387	SUPERFAMILY	RNA-binding domain, RBD	290	380	IPR035979	GO:0003676
	Trre5g04005	387	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	299	375	IPR000504	GO:0003723
	Trre5g04005	387	Pfam	Ataxin-2 C-terminal region	121	135	IPR009818	-
	Trre5g04005	387	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	202	277	IPR000504	GO:0003723
	Trre5g04005	387	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	119	380	-	-
	Trre5g04005	387	FunFam	Polyadenylate-binding protein-interacting protein 10	293	371	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g04005	Trre-Chr5	41268223	41273032	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g04005	204	363	Eukaryotic Initiation Factors Gene Family	AT1G34140	27.439	6.50e-12	64.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g04005	-		-	gmx:106794116	590.882