Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04003 ATGGCGGTTGCTGATAATGTTGGTGCCAAAATCGGTTCTTCAAGTCAGAATTTGGACAACAACAACAACAACAACAACAACGTTGTATCATCTGACTCAGCTGAGGTGGAGAAATCGAAACCTAGGACCGATCAGGATGTGAACAACAATGGTGTGTTCAATCATCAACACCAAGAAAGAGTTCCCAATGGTAATTATGGCTTCAAGACTCATCAAATGGGTCAGATGCATGCTAATGGGGTTCAGAACCAGCAGTTTGTGGTGAACAATGATGGGTATGTGATGAATGGAAATGGGGGTGAGAGTTTCAAGCGCGAAATGAGGGATTTGGAAGAGCTGTTGTCAAAGCTGAATCCCATGGCTGAGGAATTTGTTCCTCCATCACTAACAAATAATCAGGGCTACTTAGCTGCTGGACCTGCTGCTGGGTTTGGTTACCCTCCTAATAATTTTATACTTTTAAATAATTATGCTAATGCTAACGGCCAAACTAACCGAAGGAGGAAGAATGGCTTTACTACTAATGGAAAACGAAGAGTGAATCATAAGGTAGATATGGAGAAACGGGAAGAGATGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAATTGGTTACTGAAGAGCAGCTGGCATCTCTCTTTCTTAATTGCGGCCAGGTTGTTGATTGCCGTGTATGCGGAGATCCCAATTCTATTCTCCGATTTGCTTTCATTGAGTTTACTGATGAAGAAAGTGCTAGGGCTGCTGTAAGCCTGTCTGGAACTATGCTGGGATATTACCCGCTAAGAGTGCTTCCTTCCAAGACTGCTATTGCACCTGTCAATCCAACATTTTTGCCTAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACTATTTATTGCACAAACATCGACAAGAAGCTGACTCAAGCTGATGTGAAACACTTCTTTGAATCAATCTGTGGAGAGGTCCAACGACTGAGGCTTCTTGGGGATTACCAGCATTCAACTCGGATTGCATTTGTTGAGTTCACAGTGGCTGAGAGTGCAATTGCTGCTCTAAGCTGCAGTGGCGTGATTTTGGGTGCGCTGCCTATAAGGGTAAGTCCGTCAAAGACACCAGTCCGAGCTCGTTCTCCTCGTAGTCCATGA 1137 0.4398 MAVADNVGAKIGSSSQNLDNNNNNNNNVVSSDSAEVEKSKPRTDQDVNNNGVFNHQHQERVPNGNYGFKTHQMGQMHANGVQNQQFVVNNDGYVMNGNGGESFKREMRDLEELLSKLNPMAEEFVPPSLTNNQGYLAAGPAAGFGYPPNNFILLNNYANANGQTNRRRKNGFTTNGKRRVNHKVDMEKREEMIRRTVYVSDIDQLVTEEQLASLFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAAVSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYQHSTRIAFVEFTVAESAIAALSCSGVILGALPIRVSPSKTPVRARSPRSP 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04003 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 270 IPR000504 GO:0003723
Trre5g04003 378 FunFam Polyadenylate-binding protein-interacting protein 11 157 272 - -
Trre5g04003 378 CDD RRM2_CID8_like 288 369 IPR034825 -
Trre5g04003 378 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 112 373 - -
Trre5g04003 378 MobiDBLite consensus disorder prediction 45 60 - -
Trre5g04003 378 MobiDBLite consensus disorder prediction 9 34 - -
Trre5g04003 378 SUPERFAMILY RNA-binding domain, RBD 185 271 IPR035979 GO:0003676
Trre5g04003 378 Gene3D - 156 272 IPR012677 -
Trre5g04003 378 Gene3D - 279 375 IPR012677 -
Trre5g04003 378 Pfam Ataxin-2 C-terminal region 114 128 IPR009818 -
Trre5g04003 378 SUPERFAMILY RNA-binding domain, RBD 283 373 IPR035979 GO:0003676
Trre5g04003 378 SMART rrm1_1 196 266 IPR000504 GO:0003723
Trre5g04003 378 SMART rrm1_1 293 364 IPR000504 GO:0003723
Trre5g04003 378 FunFam Polyadenylate-binding protein-interacting protein 10 286 364 - -
Trre5g04003 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 260 IPR000504 GO:0003723
Trre5g04003 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 356 IPR000504 GO:0003723
Trre5g04003 378 MobiDBLite consensus disorder prediction 1 60 - -
Trre5g04003 378 CDD RRM1_CID8_like 193 272 IPR034823 -
Trre5g04003 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 368 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04003 Trre-Chr5 41227795 41232096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04003 194 356 Eukaryotic Initiation Factors Gene Family AT1G34140 25.749 8.84e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04003 - - gmx:100788102 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04003 5 41227795 41232096 Trre5g04003 5 41227795 41232096 ECH