Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04002 ATGCCATTTATTGGAACCCGCTATATGTATAGGCGACAAGGAATGTGCCGTCGGCTTCTAAATGCCATTGAATGGTTTGGAATATCTGTCATGGTTATTGCCTGCCCTTGTACTTTGGGTTTAGCCACGCCTACTGCTGTTATGGTTGGCACCGGTGTTGGTGCATCTCAGGGTGTATTGATCAAAGGGGGGCAAGCTTTGGAAAGTGCACATAAGGTAAATTGCATTGTTTTTGACAAGACGGGTACTCTCACTATTGGGAAACCGGTAATAGTAAATACCAAACTATTGACAAAAATGGTACTCCGGGAATTCTATGAACTTGTGGCTGCAGCAAACGTAAGCACATGCCCCCCATCTCCTTGTAAAAGCCTTAGCCTCAGAAATAGTTATAGAGAACAATTGTTTTCCTATTAA 417 0.4317 MPFIGTRYMYRRQGMCRRLLNAIEWFGISVMVIACPCTLGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVIVNTKLLTKMVLREFYELVAAANVSTCPPSPCKSLSLRNSYREQLFSY 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04002 138 ProSitePatterns E1-E2 ATPases phosphorylation site. 79 85 IPR018303 -
Trre5g04002 138 Gene3D - 3 101 - -
Trre5g04002 138 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Trre5g04002 138 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 26 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04002 Trre-Chr5 41217483 41218366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04002 26 134 Primary Pumps ATPases AT1G63440 75.229 2.19e-49 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04002 K17686 - gmx:100810141 168.703