Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04001 ATGTCACATACTAGGCAAAACAATATGATGAGTCCAAACGTGTTTCCTAAACACGTTGGTGACACAACTTATACTAAGATTTTTGTTGGTGGATTGGCTTGGGAGACTAAAAGAGACACACTCAAACATTATTTTGATCAGTTTGGTGATATCTTAGAAGCTGTTGTCATCACTGATAGAACAACTGGAAAATCAAAAGGATATGGCTTTGTTACTTTCAAGGATCCAAATTCTGCAATACTTGCTTGCCAGAATCCTAATCCTATGATTGATGGAAGAAGAGCTAATTGTAATATTGCATCTCAACAACCTGATTCAGGAAAACAGAAAATCAATAGTCCTTCATGGACTAATGCACCAATTCAATATCAAGGTTCATCCATATATTACAATCAACATGTACCTCAATATGCATTTCCTTGTCCAGTTTACAGGTACCCTCAACCTGGTTACCATAGTCCACAAGACATTTATGAAATGAGCTATTATAATAATGCATATGGTGGACCACAATTTCCATATCGTTGGATTCCAGCAGCATATTACCAACCCTATTATGGCCTTAATAGACAATTAATTCCAATAACATATGTGAAAAAGACACAATTCCATGATGTTGTTGGCATATCAGGAACTATTTCACCTTCTACTTCAATTTCTAGCACTGGAGCTGCAACAAGAGTGATAGAATCATCCAAAGATCAAACATCTTCAGCTTAA 720 0.3597 MSHTRQNNMMSPNVFPKHVGDTTYTKIFVGGLAWETKRDTLKHYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQNPNPMIDGRRANCNIASQQPDSGKQKINSPSWTNAPIQYQGSSIYYNQHVPQYAFPCPVYRYPQPGYHSPQDIYEMSYYNNAYGGPQFPYRWIPAAYYQPYYGLNRQLIPITYVKKTQFHDVVGISGTISPSTSISSTGAATRVIESSKDQTSSA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04001 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 102 IPR000504 GO:0003723
Trre5g04001 239 CDD RRM_RBM24_RBM38_like 25 100 - -
Trre5g04001 239 SUPERFAMILY RNA-binding domain, RBD 3 112 IPR035979 GO:0003676
Trre5g04001 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 86 IPR000504 GO:0003723
Trre5g04001 239 Gene3D - 2 113 IPR012677 -
Trre5g04001 239 PANTHER BOULE-RELATED 11 194 - -
Trre5g04001 239 SMART rrm1_1 26 98 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04001 Trre-Chr5 41204934 41206844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04001 21 110 C2H2 Transcription Factor Family AT2G19380 39.560 7.71e-16 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04001 - - cam:101508568 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04001 5 41204934 41206844 Trre5g04001 5 41204934 41206844 ECH