Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03996 ATGATCCATTTAAGATTTATTTTGCTACTATGTTTCCTACTTCATAATTTTCATGTCATCATTTGTAACAATAGCACCACAGACAAAGATATACTTCTATCTTTCAAATTACAAGTAACTGATCCAAACAATGCTCTATCAAGTTGGAGACAAGATTATAATCACTGTACTTGGTATGGTGTCAACTGTTCCAAACTTGATCAAAGAGTTCAATCTCTAACCTTATCAGGACTTAGTCTCTCTGGTAAACTACCTTCTAATCTCTCCAACCTCACTTATCTTCATACACTTGACCTTTCAAATAACAGTTTTGATGGCCAAATTCCCTTCCAATTTTCTCATCTCTCACTGCTTAGTGTCATTCATTTACCTTACAACAATCTCTCTGGTACACTTCCACCTCAATTGGGTCAACTCCATAATCTACAAATTTTGGACTTTTCTGTCAATAATCTCACAGGTAAAATCCCTTCAACTTTTGGTAATCTCTTTTCTCTTAAGAATCTTTCCTTGGCAAGAAACATGTTTTTTGGTGAGATTCCAAGTGAATTAGGCAATCTCCAAAATCTTTCAAGACTTCAACTCTCACAAAACAATTTCATCGGCGAGATTCCTACTTCTTTCTTCTTCAATCTCTCTTCCTTGCACTTTTTATCCTTAACAATGAACAATTTATCAGGTATTTTGCCACAAAAATTCGGTGACTACTTTCCGAATTTAAGGACACTTACTTTAGCAACTAATAGATTTGAAGGGGTGATTCCTAATTCCATATCCAATTTATCACATCTTCAAGTTATTGATCTTGCTAACAATAGATTTCATGGGCCAATACCTCTTTTCACCAACTTCAAAAATCTCACTTATTTGGTTCTTAGTAATAATTTGCTCACTTCCACCACATTATTGAATTTTGAATTCTTTGAGTCTCTTAGAAACTCCACTCAGTTGGAAATTCTTAAGGTCAATGATAACAATTTGACTGGTGAACTTCCAAATTCTGTTGCTTATCTTTCAAGCAATCTACAAGAGTTCTGTGTTGCTAATAATAAGCTAAATGGAACTATTCCTAAGGGAATGAAAAAATTGCAAAATCTCACATCCTTCTCCTTTGAACAGAATAATTTCACCGGCGAGTTACCATTAGAATTAGGAACACTCAAGAAACTGCAAAGGCTATTGATATACCAAAATAGATTGTCTGGTGAAATTCCAGACATATTTGGCAATTTTACAAATCTTTTTGTTCTTGCATTAGGAAAAAACCAGTTCTCAGGTAGAATTCCCACGAGTATCAGACAATGCGAGAGTTTGAATATACTTGACTTAGAAAAGAATAAGCTTGTAGGTGTCATACCAATTGAGATTTTTCAACTCTCTGGCTTGACGGCCTTGTACTTACATGGAAATTCTTTGAACGGTTCGCTTCCTCCTGTATCCAACATGAAGCAGCTAGAGACAATGTTTGTTTCGGACAACAAGCTGTCGGGGAACATTCCTGAAATCAAAGCAAACGGCTTGAAGACGCTTTTGATGGAAAGAAACAAATTTAGTGGCTCAATTCCAAATACTCTAGGGGATTTAACATCCCTTGAGACACTGGATTTATCATCAAACAATCTCACCGGTTCAATTCCTGAGAGTTTAGAAAATCTCAAATATATGGTCAGCTTAAATTTGTCTTTCAACAAATTGGAAGGAGAGGTTCCTATGAAAGGTGTTTTTATGAACCTAAGCCAGGTTGATCTCCAAGGTAAGAAAAAGAAGAGAAACATTTTACTTCCTATCACACTCGGGATTATAGGCGCGGCTGTTTTGTTCGCTACAGTGATCTATCTACTGTGGCGGCTAATGTCCTTAAAGAAGGAACACAAGGAGGAGATAAGAACTTTTTCATCAATTCCTCTAAAGGGGATGCCTCAAAATATAACCTATGATTTTGGATTGGCAAGGTTTCTCTCTCAAAATTCATCAGAGAAACATAGCAGCACTCTAGAATTGAAGGGATCAATCGGCTATATCGCCCCAGAATATGGTCTAGGTGGAAAGGCTTCAACTAGTGGTGATGTGTACAGTTTTGGAATCCTACTCCTAGAGATATTCATAGCCAAAAAACCAACAGATGAAATGTTCAAAGAAGGATTAAGCATGAACAAATTTGTATTAGACATGGATGACAAGCAATTACTTAAAGTTGTTGATCAAAGACTTATCAACCAATTTGAGTATTCAACACAAAATTTCAGCAGTGATTGTAATAGTAGTAGTACTAGTGCGTCTATCGACAACAGTTACAGTGACGGTATTCCAGATTGGATGCACAAAGCTAAGGAGTGCATAGCTGCTTCAATGAGAGTTGGCTTGTCATGTGTATCATATCATCCAAAAGATCGGTGGACAATGAGGGAAGCCGTATCAAAATTGCATGGAATTAAGCAGTCTATACTAGGCTTATGA 2457 0.3639 MIHLRFILLLCFLLHNFHVIICNNSTTDKDILLSFKLQVTDPNNALSSWRQDYNHCTWYGVNCSKLDQRVQSLTLSGLSLSGKLPSNLSNLTYLHTLDLSNNSFDGQIPFQFSHLSLLSVIHLPYNNLSGTLPPQLGQLHNLQILDFSVNNLTGKIPSTFGNLFSLKNLSLARNMFFGEIPSELGNLQNLSRLQLSQNNFIGEIPTSFFFNLSSLHFLSLTMNNLSGILPQKFGDYFPNLRTLTLATNRFEGVIPNSISNLSHLQVIDLANNRFHGPIPLFTNFKNLTYLVLSNNLLTSTTLLNFEFFESLRNSTQLEILKVNDNNLTGELPNSVAYLSSNLQEFCVANNKLNGTIPKGMKKLQNLTSFSFEQNNFTGELPLELGTLKKLQRLLIYQNRLSGEIPDIFGNFTNLFVLALGKNQFSGRIPTSIRQCESLNILDLEKNKLVGVIPIEIFQLSGLTALYLHGNSLNGSLPPVSNMKQLETMFVSDNKLSGNIPEIKANGLKTLLMERNKFSGSIPNTLGDLTSLETLDLSSNNLTGSIPESLENLKYMVSLNLSFNKLEGEVPMKGVFMNLSQVDLQGKKKKRNILLPITLGIIGAAVLFATVIYLLWRLMSLKKEHKEEIRTFSSIPLKGMPQNITYDFGLARFLSQNSSEKHSSTLELKGSIGYIAPEYGLGGKASTSGDVYSFGILLLEIFIAKKPTDEMFKEGLSMNKFVLDMDDKQLLKVVDQRLINQFEYSTQNFSSDCNSSSTSASIDNSYSDGIPDWMHKAKECIAASMRVGLSCVSYHPKDRWTMREAVSKLHGIKQSILGL 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03996 818 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 645 809 - -
Trre5g03996 818 ProSiteProfiles Protein kinase domain profile. 413 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03996 818 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Trre5g03996 818 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515
Trre5g03996 818 Gene3D Ribonuclease Inhibitor 281 589 IPR032675 -
Trre5g03996 818 SMART LRR_sd22_2 284 307 - -
Trre5g03996 818 SMART LRR_sd22_2 482 501 - -
Trre5g03996 818 SMART LRR_sd22_2 339 368 - -
Trre5g03996 818 SMART LRR_sd22_2 528 554 - -
Trre5g03996 818 SMART LRR_sd22_2 139 171 - -
Trre5g03996 818 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 206 301 - -
Trre5g03996 818 SUPERFAMILY Protein kinase-like (PK-like) 645 811 IPR011009 -
Trre5g03996 818 Gene3D Ribonuclease Inhibitor 179 280 IPR032675 -
Trre5g03996 818 PRINTS Leucine-rich repeat signature 94 107 - -
Trre5g03996 818 PRINTS Leucine-rich repeat signature 528 541 - -
Trre5g03996 818 SUPERFAMILY L domain-like 25 332 - -
Trre5g03996 818 ProSiteProfiles Leucine-rich repeat profile. 530 553 IPR001611 GO:0005515
Trre5g03996 818 SMART LRR_typ_2 139 162 IPR003591 -
Trre5g03996 818 SMART LRR_typ_2 459 483 IPR003591 -
Trre5g03996 818 SMART LRR_typ_2 212 235 IPR003591 -
Trre5g03996 818 SMART LRR_typ_2 187 211 IPR003591 -
Trre5g03996 818 SMART LRR_typ_2 387 410 IPR003591 -
Trre5g03996 818 SMART LRR_typ_2 528 552 IPR003591 -
Trre5g03996 818 SMART LRR_typ_2 237 260 IPR003591 -
Trre5g03996 818 SMART LRR_typ_2 91 114 IPR003591 -
Trre5g03996 818 SMART LRR_typ_2 261 283 IPR003591 -
Trre5g03996 818 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 184 - -
Trre5g03996 818 SUPERFAMILY L domain-like 311 585 - -
Trre5g03996 818 Pfam Protein tyrosine and serine/threonine kinase 646 713 IPR001245 GO:0004672|GO:0006468
Trre5g03996 818 Pfam Leucine rich repeat 238 297 IPR001611 GO:0005515
Trre5g03996 818 Pfam Leucine rich repeat 506 565 IPR001611 GO:0005515
Trre5g03996 818 Pfam Leucine rich repeat 413 472 IPR001611 GO:0005515
Trre5g03996 818 Gene3D Transferase(Phosphotransferase) domain 1 641 815 - -
Trre5g03996 818 FunFam LRR receptor-like serine/threonine-protein kinase EFR 303 589 - -
Trre5g03996 818 Gene3D Ribonuclease Inhibitor 25 178 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03996 Trre-Chr5 41168659 41171775 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03996 646 813 Receptor kinase-like Gene Family AT3G47570 32.749 5.98e-21 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre5g03996 PK_Tyr_Ser-Thr 4.9e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03996 - - mtr:11428205 942.569