Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03993 ATGATCCATATAAGACATATTTTGCTACTATGTTTCCTACTTCATAATTTTTATGTCATCATATGCAACAATAGCACCACAGACAAAGATATTCTTCTATCTTTCAAATTACAAGTAACTGATCCAAACAATGCTTTATCAAGTTGGAGACAAGATTCTAATCACTGTACTTGGTATGGTGTCAATTGTTCCAAACTTGATCAAAGAGTTCAATCTCTAACCTTATCAGGACTTAGTCTCTCTGGTAAATTACCTTCCAATCTCTCAAACCTCACATACCTTCAAATACTAGACCTTTCCAATAACAATTTTGATGGCCAAATTCCCTTTCAATTTTCTCATCTCTCACTCCTTAGTGTCATTCATTTACCTTACAACAATCTCACTGGTACACTTCCACCACAATTGGGTCAACTCCATAATCTAAAACATTTAGACTTTTCTGTGAATAATCTCACAGGTAAAATCCCTTCATCATTTGGCAATCTCTTTTCTCTCGAAAAACTTTTCTTGTCAAGGAACAGATTTGTTGGTGAGATTCCGAGTGAATTTGGTAATCTCAGCAATCTTTCAACACTTCAACTCTCAGATAACAATTTCAGTGGCAAGTTTCTTTTTTCTATGTTCTTCAGCTTATCTTCCTTAGTTGACTTATCACTCACAAACAACAATCTATCAGGCGAGTTGCCGCAAAATTTTGGCAACTACTTTCAGAATTTAAGGACACTTACCTTGTCAACTAATAGATTTGAAGGGGTGATTCCTAATTCTATATCCAATTCATCACATCTTTGCAAAATTGATTTATCAAACAATAGTTTTCATGGGCCAATACCACATTTTAACAACTTGAAAAACCTCACTTATTTGGCTCTTGATTATAACAATCTCACTTCCACCACATCCTTGAATTTTCAGTTCTTTGATTCTCTTAGAAACTCCACTCTGTTGGAAACTCTTAAGGTGAACGATAACTACTTGGCTGGGGAACTTCCAAATTCTGTTGCCAATCTTTCAAGCAATCTACAACAGTTTTGTGTTGCCAATAATCAGCTAAGTGGAAGCATTCCTCGTGGAATGAACAAGTTACAAAGTCTCACATCATTCTCTTTTGAACAGAATTATTTTAATGGAGAGTTTCCATTAGAATTAGGATCACTGGAAAAACTGCAGCAGCTTGCAATATCCCAAAATAGATTGTCTGGTGAAATTCCAGACGTGTTTGGCAATTTAACAAATCTGGATAAGCTTCAAATATGGAACAACCAGTTCACAGGTAGAATTCCTGCAAGTATTGGAAAATGCAAGAGATTGACTGATCTTCAGTTAGGAATAAATAAGTTTGTTGGTGCCATACCAATGGAGATTTTTCAACTCTCTGGCTTGACAAACTTGAATTTAAAAGGAAATTCTTTGAATGGTTCGCTTCCTTCTGAATTCGACAAAATGGAGCAGCTTGAATTCATGGATGTTTCGGACAACAAACTGTCAGGGAACATTCCTAAAATCGAACTATACCGCTTGAATAAGCTTATGATGGCAAGAAACAAATTTAGCGGCTCAATTCCAAATACTCTAGGGGATTTAGCATCCCTTGAGACACTGGATTTATCATCAAACAATCTCACCGGTTCAATTCCTGAGAGTTTAGAAAATCTCAAATATATGGTCAGCTTAAATTTGTCTTTCAACAAATTGGAAGGAGAGGTTCCTATGAAAGGTGTTTTTATGAACCAAAGCCAAGTTGATCTGCAAGGTAACATTAAATTATGTGGCCTTAACAATGAAGTTATGCACAAGTTCGGAGTCACTTTGTGTGTTGCAGGTAAGAAAAAGAAGAGAAACATTTTACTTCCTATCACACTCGGGATTATAGGCGCGGCTGTTTTGTTCGCTACAGTGATCTATCTACTGTGGCGGCTAATGTCAAAGAAGAAACACAAAGAGGATAAAAGAGCTTTGACATCAACTCCTCTAAAGGGGATGCCTCAAAATATAACCTATGGTGATATTAGGCATGCTACAAACAATTTTTCAGCTGCAAACATGGTTGGAAAAGGAGGCTTTGGTTCTGTTTACAAGGGTGTGTTCAACATCAGCACTTGTGAAAGTCAAACTACCACACTTGCTGTTAAAATTCTGGACCTGCAACAAAGCAAAGCCTCTCAGAGTTTTAATGCAGAATGTGAAACTTTGAAAAATGTTCGGCATCGGAATCTGGTCAAGGTGATTACTTCTTGCTCCAGCACTGATTACAAGGGGGATGAGTTTAAGGCCCTAGTTATGCAATTCATGCCTAATGGTAATTTGGAGATGAGTTTATACCCGGAAGATCTTGAGTCGGACTCTTCGTTAACCTTGTTGCAAAGGTTAAACATTGCCATTGATGTTGCATCTGCCATGGACTACTTGCACAATGACTGTGATCCACCAATAGTCCATTGTGATCTCAAACCTGCAAATGTCCTAATAGATGAAGACATGGTTGCACATGTGGCAGATTTTGGATTGGCAAGGTTTCTCTCTCAAAATCCATCAGAGAAACATAGCAGCACTCTAGAATTGAAGGGATCAATCGGCTATATCGCCCCAGAATATGGTCTAGGTGGAAAGGCTTCAACTAGTGGTGATGTGTACAGTTTTGGAATCCTACTCCTAGAGATATTCATAGCCAAAAAACCAACAGATGAAATGTTCAAAGAAGGATTAAGCATGAACAAATTTGTATTAGACATGGATGACAAGCAATTACTTAAAGTTGTTGATCAAAGACTTATCAACCAATTTGAGTATTCAACACAAAATTTGAGCAGTGATTGTAATATTAGTAGTACTAGTATCGACAACAGTTACAGTGACGGTATCCCAGATTGGATGCACAAAGCTGAGGAGTGTATAGCTGCTTCAATGAGAGTTGGCTTGTCATGTGTATCATATCATCCAAAAGATCGGTGGACAATGAGGGAAGCCGTATCAAAATTGCATGGAATTAAGCAGTCTATACTAGGCTTATGA 3015 0.3741 MIHIRHILLLCFLLHNFYVIICNNSTTDKDILLSFKLQVTDPNNALSSWRQDSNHCTWYGVNCSKLDQRVQSLTLSGLSLSGKLPSNLSNLTYLQILDLSNNNFDGQIPFQFSHLSLLSVIHLPYNNLTGTLPPQLGQLHNLKHLDFSVNNLTGKIPSSFGNLFSLEKLFLSRNRFVGEIPSEFGNLSNLSTLQLSDNNFSGKFLFSMFFSLSSLVDLSLTNNNLSGELPQNFGNYFQNLRTLTLSTNRFEGVIPNSISNSSHLCKIDLSNNSFHGPIPHFNNLKNLTYLALDYNNLTSTTSLNFQFFDSLRNSTLLETLKVNDNYLAGELPNSVANLSSNLQQFCVANNQLSGSIPRGMNKLQSLTSFSFEQNYFNGEFPLELGSLEKLQQLAISQNRLSGEIPDVFGNLTNLDKLQIWNNQFTGRIPASIGKCKRLTDLQLGINKFVGAIPMEIFQLSGLTNLNLKGNSLNGSLPSEFDKMEQLEFMDVSDNKLSGNIPKIELYRLNKLMMARNKFSGSIPNTLGDLASLETLDLSSNNLTGSIPESLENLKYMVSLNLSFNKLEGEVPMKGVFMNQSQVDLQGNIKLCGLNNEVMHKFGVTLCVAGKKKKRNILLPITLGIIGAAVLFATVIYLLWRLMSKKKHKEDKRALTSTPLKGMPQNITYGDIRHATNNFSAANMVGKGGFGSVYKGVFNISTCESQTTTLAVKILDLQQSKASQSFNAECETLKNVRHRNLVKVITSCSSTDYKGDEFKALVMQFMPNGNLEMSLYPEDLESDSSLTLLQRLNIAIDVASAMDYLHNDCDPPIVHCDLKPANVLIDEDMVAHVADFGLARFLSQNPSEKHSSTLELKGSIGYIAPEYGLGGKASTSGDVYSFGILLLEIFIAKKPTDEMFKEGLSMNKFVLDMDDKQLLKVVDQRLINQFEYSTQNLSSDCNISSTSIDNSYSDGIPDWMHKAEECIAASMRVGLSCVSYHPKDRWTMREAVSKLHGIKQSILGL 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03993 1004 SMART serkin_6 678 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03993 1004 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 765 1003 - -
Trre5g03993 1004 Gene3D Ribonuclease Inhibitor 137 210 IPR032675 -
Trre5g03993 1004 Gene3D Phosphorylase Kinase; domain 1 659 764 - -
Trre5g03993 1004 FunFam Leucine-rich repeat receptor protein kinase EMS1 205 303 - -
Trre5g03993 1004 SUPERFAMILY L domain-like 25 310 - -
Trre5g03993 1004 Pfam Leucine rich repeat 239 297 IPR001611 GO:0005515
Trre5g03993 1004 Pfam Leucine rich repeat 118 176 IPR001611 GO:0005515
Trre5g03993 1004 Pfam Leucine rich repeat 507 566 IPR001611 GO:0005515
Trre5g03993 1004 Pfam Leucine rich repeat 437 496 IPR001611 GO:0005515
Trre5g03993 1004 ProSitePatterns Protein kinases ATP-binding region signature. 684 712 IPR017441 GO:0005524
Trre5g03993 1004 SUPERFAMILY L domain-like 342 594 - -
Trre5g03993 1004 Gene3D Ribonuclease Inhibitor 211 600 IPR032675 -
Trre5g03993 1004 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Trre5g03993 1004 ProSiteProfiles Protein kinase domain profile. 678 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03993 1004 ProSiteProfiles Leucine-rich repeat profile. 286 307 IPR001611 GO:0005515
Trre5g03993 1004 SMART LRR_typ_2 529 553 IPR003591 -
Trre5g03993 1004 SMART LRR_typ_2 411 435 IPR003591 -
Trre5g03993 1004 SMART LRR_typ_2 284 310 IPR003591 -
Trre5g03993 1004 SMART LRR_typ_2 459 482 IPR003591 -
Trre5g03993 1004 SMART LRR_typ_2 387 410 IPR003591 -
Trre5g03993 1004 SMART LRR_typ_2 212 235 IPR003591 -
Trre5g03993 1004 SMART LRR_typ_2 237 260 IPR003591 -
Trre5g03993 1004 SMART LRR_typ_2 163 186 IPR003591 -
Trre5g03993 1004 SMART LRR_typ_2 91 114 IPR003591 -
Trre5g03993 1004 SMART LRR_typ_2 139 162 IPR003591 -
Trre5g03993 1004 Pfam Protein tyrosine and serine/threonine kinase 681 901 IPR001245 GO:0004672|GO:0006468
Trre5g03993 1004 FunFam LRR receptor-like serine/threonine-protein kinase EFR 304 612 - -
Trre5g03993 1004 ProSiteProfiles Leucine-rich repeat profile. 531 554 IPR001611 GO:0005515
Trre5g03993 1004 FunFam LRR receptor-like serine/threonine-protein kinase EFR 649 764 - -
Trre5g03993 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Trre5g03993 1004 Gene3D Transferase(Phosphotransferase) domain 1 765 1001 - -
Trre5g03993 1004 Gene3D Ribonuclease Inhibitor 27 136 IPR032675 -
Trre5g03993 1004 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 184 - -
Trre5g03993 1004 SUPERFAMILY Protein kinase-like (PK-like) 655 994 IPR011009 -
Trre5g03993 1004 PANTHER LEUCINE RICH REPEAT KINASE 2 283 998 - -
Trre5g03993 1004 PRINTS Leucine-rich repeat signature 529 542 - -
Trre5g03993 1004 PRINTS Leucine-rich repeat signature 94 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03993 Trre-Chr5 41097859 41100997 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03993 27 999 Receptor kinase-like Gene Family AT3G47570 40.394 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre5g03993 PK_Tyr_Ser-Thr 4.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03993 - - mtr:11428205 1502.26