Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03990 ATGACCCATATACTATTTAATTTGCTACTATGTTTTCTACTTCATAATTTTCATGTAATCATTTGCAACAAAAGCACCACAGACAAAGATATCCTTCTATCTTTCAAATTACAAGTAACTGATCCAAACAATGCTTTATCAAGTTGGAGACAAGATTCTAATCATTGTACTTGGTATGGTGTCAACTGTTCCAAACTTGATCAAAGAGTTCAATCTCTAACCTTATCAGGACTTAGTCTCTCTGGTAAACTACCTTCTAATCTCTCCAACCTCACTTACCTTAATTCACTTGACCTTTCCAATAACAGTTTTGATGGCCAAATTCCCTTCCAATTTTCTCATCTCTCACTCCTTAATGTCATTAAATTACCTTACAACAATCTCTCTGGTACACTTCCACCACAATTGGGTCAACTACATAATCTACAAATTTTGGACTTTTCTGTCAATAATCTCGTAGGTAAAATTCCATCAACTTTTGGTAATCTCTTTTCTCTTAAGAATCTTTCATTAAAAAGAAACATGTTTTTTGGTGAGATTCCAAGTGAATTAGGCAATCTCCACAATCTTTCAAGACTTCAACTCTCACAAAACAATTTCACCGGCGAGATTCCTACTTCTTTCTTCTTCAATCTCTCTTCCTTGGACTTTTTATCCTTAACAAGGAACAATTTATCAGGCATTTTGCCACAAAAATTCGGTGACTACTTTCCGAATTTAAGGACACTTACTTTGGCAACTAATAGATTTGAAGGTGTGATTCCTAATTCCATATCCAATTTATCACATCTTCAAATCATTGATCTTGCTAACAATAGATTTCATGGGCCAATCCCTCTTTTCACCAACTTCAAAAATCTCACTTATTTGGTTCTTAGTAATAATTTGCTAACTTCCACCACAGCATTGAATTTTCAATTCTTTAATTCTCTTAGAAACTCTACTCAGTTGGAAATTCTTATGGTCAGTGATAACAACTTGGCTGGTGAACTTCCAAATTCTGTTGCTTATCTTTCAAGCAATCTACAACAGTTCTATGTTGATCGTAATAAGCTAAATGGAACTATTCCTAAGGGAATGAAAAAATTTCAAAATCTCACATCCTTATCTTTTGAACATAATTATTTCACCGGTGAGTTACCATTAGAATTAGGAACACTAAAGAAATTGGAGCAGATATTGATCTACCAAAATAGATTGTCTGGTGAAATTCCAGACATATTTGGTAATTTTACAAATCTGTTTATTCTTGCATTAGGAAACAACCAGTTCTCAGGTAGAATTCCCACGAGTATCGGAGAATGCGAGAAATTGAATATACTTGACTTAGAAATGAATAATTTTGTTGGTGTCATACCAATGGAGATTTTTCAACTCTCTGGCTTGACAGCTTTGTACTTACATGGAAATTCTCTGAACGGTTCGCTTCCTCCTGTATCCAACATGGAGCAGCTAGGGATAATGTATGTTTCAAACAACATGCTGTCAGGGAACATTCCTGAAATCAAAGCAAACGGCTTGAAGACGCTTTTGATGGAACGAAACAAATTTAGTGGCTCAATTCCAAATAGTCTAGGGGATTTAGCATCGCTTGAGACACTGGATTTATCATCAAACAATCTCACTGATGAAGACATGGTTGCACATGTGGCAGATTTTGGATTGGCAAGGTTTCTCTCTCAAAATTCATCAGAGAAACATAGCAGCACTCTAGAATTGAAGGGATCGATCGGCTATATCGCCCCAGAATATGGTCTAGGTGGAAAGGCTTCAACTAGTGGTGATGTGTACAGTTTTGGAATCCTACTCCTAGAGATATTCATAGCCAAAAAACCAACAGATGAAATGTTCAAAGAAGGATTAAGCATGAACAAATTTGTATTAGACATGGATGACAAGCAATTACTTAAAGTTGTTGATCAAAGACTTATCAACCAATTTGAGTATTCAACACAAAATTTCAGCAGTGATTGTAATAGTAGTAGTACTAGTGCGTCTATCGACAACAGTTACAGTGACGGTATTCCAGATTGGATGCACAAAGCTAAGGAGTGCATAGCTGCTTCAATGAGAGTTGGCTTGTCATGTGTATCATATCATCCAAAAGATCGGTGGACAATGAGGGAAGCCGTATCAAAATTGCATGGAATTAAGCAGTCTATACTAGGCTTATGA 2175 0.3586 MTHILFNLLLCFLLHNFHVIICNKSTTDKDILLSFKLQVTDPNNALSSWRQDSNHCTWYGVNCSKLDQRVQSLTLSGLSLSGKLPSNLSNLTYLNSLDLSNNSFDGQIPFQFSHLSLLNVIKLPYNNLSGTLPPQLGQLHNLQILDFSVNNLVGKIPSTFGNLFSLKNLSLKRNMFFGEIPSELGNLHNLSRLQLSQNNFTGEIPTSFFFNLSSLDFLSLTRNNLSGILPQKFGDYFPNLRTLTLATNRFEGVIPNSISNLSHLQIIDLANNRFHGPIPLFTNFKNLTYLVLSNNLLTSTTALNFQFFNSLRNSTQLEILMVSDNNLAGELPNSVAYLSSNLQQFYVDRNKLNGTIPKGMKKFQNLTSLSFEHNYFTGELPLELGTLKKLEQILIYQNRLSGEIPDIFGNFTNLFILALGNNQFSGRIPTSIGECEKLNILDLEMNNFVGVIPMEIFQLSGLTALYLHGNSLNGSLPPVSNMEQLGIMYVSNNMLSGNIPEIKANGLKTLLMERNKFSGSIPNSLGDLASLETLDLSSNNLTDEDMVAHVADFGLARFLSQNSSEKHSSTLELKGSIGYIAPEYGLGGKASTSGDVYSFGILLLEIFIAKKPTDEMFKEGLSMNKFVLDMDDKQLLKVVDQRLINQFEYSTQNFSSDCNSSSTSASIDNSYSDGIPDWMHKAKECIAASMRVGLSCVSYHPKDRWTMREAVSKLHGIKQSILGL 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03990 724 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515
Trre5g03990 724 Gene3D Ribonuclease Inhibitor 404 506 IPR032675 -
Trre5g03990 724 Gene3D Ribonuclease Inhibitor 304 403 IPR032675 -
Trre5g03990 724 SUPERFAMILY L domain-like 25 312 - -
Trre5g03990 724 PRINTS Leucine-rich repeat signature 94 107 - -
Trre5g03990 724 PRINTS Leucine-rich repeat signature 528 541 - -
Trre5g03990 724 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 208 301 - -
Trre5g03990 724 SMART LRR_typ_2 187 211 IPR003591 -
Trre5g03990 724 SMART LRR_typ_2 459 483 IPR003591 -
Trre5g03990 724 SMART LRR_typ_2 284 307 IPR003591 -
Trre5g03990 724 SMART LRR_typ_2 139 162 IPR003591 -
Trre5g03990 724 SMART LRR_typ_2 411 435 IPR003591 -
Trre5g03990 724 SMART LRR_typ_2 528 549 IPR003591 -
Trre5g03990 724 SMART LRR_typ_2 237 260 IPR003591 -
Trre5g03990 724 SMART LRR_typ_2 212 235 IPR003591 -
Trre5g03990 724 Gene3D Ribonuclease Inhibitor 24 173 IPR032675 -
Trre5g03990 724 ProSiteProfiles Leucine-rich repeat profile. 286 307 IPR001611 GO:0005515
Trre5g03990 724 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 310 549 - -
Trre5g03990 724 Gene3D Transferase(Phosphotransferase) domain 1 533 721 - -
Trre5g03990 724 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Trre5g03990 724 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 184 - -
Trre5g03990 724 Gene3D Ribonuclease Inhibitor 174 236 IPR032675 -
Trre5g03990 724 Pfam Protein tyrosine and serine/threonine kinase 538 619 IPR001245 GO:0004672|GO:0006468
Trre5g03990 724 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 536 716 - -
Trre5g03990 724 ProSiteProfiles Leucine-rich repeat profile. 530 551 IPR001611 GO:0005515
Trre5g03990 724 Gene3D Ribonuclease Inhibitor 237 303 IPR032675 -
Trre5g03990 724 SUPERFAMILY Protein kinase-like (PK-like) 538 717 IPR011009 -
Trre5g03990 724 ProSiteProfiles Protein kinase domain profile. 413 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03990 724 Pfam Leucine rich repeat 238 297 IPR001611 GO:0005515
Trre5g03990 724 SUPERFAMILY L domain-like 309 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03990 Trre-Chr5 41089063 41092198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03990 538 718 Receptor kinase-like Gene Family AT5G20480 36.957 2.97e-26 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre5g03990 PK_Tyr_Ser-Thr 2.3e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03990 - - mtr:11428205 821.617