Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03989 ATGACCCATATACTATTTAATTTGCTACTATGTTTTCTACTTCATAATTTTCATGTAATCATTTGCAACAAAAGCACCACAGACAAAGATATCCTTCTATCTTTCAAATTACAAGTAACTGATCCAAACAATGCTTTATCAAGTTGGAGACAAGATTCTAATCATTGTACTTGGTATGGTGTCAACTGTTCCAAACTTGATCAAAGAGTTCAATCTCTAACCTTATCAGGACTTAGTCTCTCTGGTAAACTACCTTCTAATCTCTCCAACCTCACTTACCTTAATTCACTTGACCTTTCCAATAACAGTTTTGATGGCCAAATTCCCTTCCAATTTTCTCATCTCTCACTCCTTAATGTCATTAAATTACCTTACAACAATCTCTCTGGTACACTTCCACCACAATTGGGTCAACTACATAATCTACAAATTTTGGACTTTTCTGTCAATAATCTCGTAGGTAAAATTCCATCAACTTTTGGTAATCTCTTTTCTCTTAAGAATCTTTCATTAAAAAGAAACATGTTTTTTGGTGAGATTCCAAGTGAATTAGGCAATCTCCACAATCTTTCAAGACTTCAACTCTCACAAAACAATTTCACCGGCGAGATTCCTACTTCTTTCTTCTTCAATCTCTCTTCCTTGGACTTTTTATCCTTAACAAGGAACAATTTATCAGGCATTTTGCCACAAAAATTCGGTGACTACTTTCCGAATTTAAGGACACTTACTTTGGCAACTAATAGATTTGAAGGTGTGATTCCTAATTCCATATCCAATTTATCACATCTTCAAATCATTGATCTTGCTAACAATAGATTTCATGGGCCAATCCCTCTTTTCACCAACTTCAAAAATCTCACTTATTTGGTTCTTAGTAATAATTTGCTAACTTCCACCACAGCATTGAATTTTCAATTCTTTAATTCTCTTAGAAACTCTACTCAGTTGGAAATTCTTATGGTCAGTGATAACAACTTGGCTGGTGAACTTCCAAATTCTGTTGCTTATCTTTCAAGCAATCTACAACAGTTCTATGTTGATCGTAATAAGCTAAATGGAACTATTCCTAAGGGAATGAAAAAATTTCAAAATCTCACATCCTTATCTTTTGAACATAATTATTTCACCGGTGAGTTACCATTAGAATTAGGAACACTAAAGAAATTGGAGCAGATATTGATCTACCAAAATAGATTGTCTGGTGAAATTCCAGACATATTTGGTAATTTTACAAATCTGTTTATTCTTGCATTAGGAAACAACCAGTTCTCAGGTAGAATTCCCACGAGTATCGGAGAATGCGAGAAATTGAATATACTTGACTTAGAAATGAATAATTTTGTTGGTGTCATACCAATGGAGATTTTTCAACTCTCTGGCTTGACAGCTTTGTACTTACATGGAAATTCTCTGAACGGTTCGCTTCCTCCTGTATCCAACATGGAGCAGCTAGGGATAATGTATGTTTCAAACAACATGCTGTCAGGGAACATTCCTGAAATCAAAGCAAACGGCTTGAAGACGCTTTTGATGGAACGAAACAAATTTAGTGGCTCAATTCCAAATAGTCTAGGGGATTTAGCATCGCTTGAGACACTGGATTTATCATCAAACAATCTCACTGATTTTGGATTGGCAAGGTTTCTCTCTCAAAATTCATCAGAGAAACATAGCAGCACTCTAGAATTGAAGGGATCGATCGGCTATATCGCCCCAGAATATGGTCTAGGTGGAAAGGCTTCAACTAGTGGTGATGTGTACAGTTTTGGAATCCTACTCCTAGAGATATTCATAGCCAAAAAACCAACAGATGAAATGTTCAAAGAAGGATTAAGCATGAACAAATTTGTATTAGACATGGATGACAAGCAATTACTTAAAGTTGTTGATCAAAGACTTATCAACCAATTTGAGTATTCAACACAAAATTTCAGCAGTGATTGTAATAGTAGTAGTACTAGTGCGTCTATCGACAACAGTTACAGTGACGGTATTCCAGATTGGATGCACAAAGCTAAGGAGTGCATAGCTGCTTCAATGAGAGTTGGCTTGTCATGTGTATCATATCATCCAAAAGATCGGTGGACAATGAGGGAAGCCGTATCAAAATTGCATGGAATTAAGCAGTCTATACTAGGCTTATGA 2148 0.3571 MTHILFNLLLCFLLHNFHVIICNKSTTDKDILLSFKLQVTDPNNALSSWRQDSNHCTWYGVNCSKLDQRVQSLTLSGLSLSGKLPSNLSNLTYLNSLDLSNNSFDGQIPFQFSHLSLLNVIKLPYNNLSGTLPPQLGQLHNLQILDFSVNNLVGKIPSTFGNLFSLKNLSLKRNMFFGEIPSELGNLHNLSRLQLSQNNFTGEIPTSFFFNLSSLDFLSLTRNNLSGILPQKFGDYFPNLRTLTLATNRFEGVIPNSISNLSHLQIIDLANNRFHGPIPLFTNFKNLTYLVLSNNLLTSTTALNFQFFNSLRNSTQLEILMVSDNNLAGELPNSVAYLSSNLQQFYVDRNKLNGTIPKGMKKFQNLTSLSFEHNYFTGELPLELGTLKKLEQILIYQNRLSGEIPDIFGNFTNLFILALGNNQFSGRIPTSIGECEKLNILDLEMNNFVGVIPMEIFQLSGLTALYLHGNSLNGSLPPVSNMEQLGIMYVSNNMLSGNIPEIKANGLKTLLMERNKFSGSIPNSLGDLASLETLDLSSNNLTDFGLARFLSQNSSEKHSSTLELKGSIGYIAPEYGLGGKASTSGDVYSFGILLLEIFIAKKPTDEMFKEGLSMNKFVLDMDDKQLLKVVDQRLINQFEYSTQNFSSDCNSSSTSASIDNSYSDGIPDWMHKAKECIAASMRVGLSCVSYHPKDRWTMREAVSKLHGIKQSILGL 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03989 715 ProSiteProfiles Leucine-rich repeat profile. 530 551 IPR001611 GO:0005515
Trre5g03989 715 Gene3D Transferase(Phosphotransferase) domain 1 536 712 - -
Trre5g03989 715 Pfam Protein tyrosine and serine/threonine kinase 541 610 IPR001245 GO:0004672|GO:0006468
Trre5g03989 715 SUPERFAMILY Protein kinase-like (PK-like) 541 708 IPR011009 -
Trre5g03989 715 PRINTS Leucine-rich repeat signature 528 541 - -
Trre5g03989 715 PRINTS Leucine-rich repeat signature 94 107 - -
Trre5g03989 715 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 384 502 IPR046959 -
Trre5g03989 715 SUPERFAMILY RNI-like 207 554 - -
Trre5g03989 715 Pfam Leucine rich repeat 238 297 IPR001611 GO:0005515
Trre5g03989 715 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515
Trre5g03989 715 Pfam Leucine Rich Repeat 530 547 IPR001611 GO:0005515
Trre5g03989 715 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 184 - -
Trre5g03989 715 ProSiteProfiles Protein kinase domain profile. 322 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03989 715 Gene3D Ribonuclease Inhibitor 179 236 IPR032675 -
Trre5g03989 715 SUPERFAMILY RNI-like 68 280 - -
Trre5g03989 715 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 208 301 - -
Trre5g03989 715 Gene3D Ribonuclease Inhibitor 25 178 IPR032675 -
Trre5g03989 715 Gene3D Ribonuclease Inhibitor 400 506 IPR032675 -
Trre5g03989 715 ProSiteProfiles Leucine-rich repeat profile. 286 307 IPR001611 GO:0005515
Trre5g03989 715 Gene3D Ribonuclease Inhibitor 237 302 IPR032675 -
Trre5g03989 715 Gene3D Ribonuclease Inhibitor 303 399 IPR032675 -
Trre5g03989 715 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Trre5g03989 715 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 310 545 - -
Trre5g03989 715 SMART LRR_typ_2 528 551 IPR003591 -
Trre5g03989 715 SMART LRR_typ_2 187 211 IPR003591 -
Trre5g03989 715 SMART LRR_typ_2 459 483 IPR003591 -
Trre5g03989 715 SMART LRR_typ_2 284 307 IPR003591 -
Trre5g03989 715 SMART LRR_typ_2 139 162 IPR003591 -
Trre5g03989 715 SMART LRR_typ_2 411 435 IPR003591 -
Trre5g03989 715 SMART LRR_typ_2 237 260 IPR003591 -
Trre5g03989 715 SMART LRR_typ_2 212 235 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03989 Trre-Chr5 41089063 41092198 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03989 535 709 Receptor kinase-like Gene Family AT5G20480 34.831 1.40e-21 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre5g03989 PK_Tyr_Ser-Thr 7.3e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03989 - - mtr:11428205 821.617