Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03983 ATGAGTGAGTTTCACGTTCAAGACAAAGAACCTAACAAAAAAACCAACAACAACAACAGCAACACTAGTAGTAGTGTTCTTCTTGGGTCGGGTGTGAAGTTGCAGTGTTTTGAAGGATTCTCTAATAAGAACATGATGTTACAGCAGCAGAATCATCAGCACCATTCATTTTCCTTTGATCATCATCATGATTCTTCTGCTGTTCCTGATGGTTATGGTCCCACAACCTACAAAATCTCTTTTGTTGGTGATTCTGATTCCTCTGCTCTAGATGCTACCACCACCATTGATAATGGCGCTGTACCTTTAAATTTGCAGCCTTTTCACAACATTTCTGCTACCACAACTCTCAAACCCTCAGTTGGAATGGCGGCTTCATTAGGATACCCTTTCACAATTTCACAATGGAAAGAGCTTGAAAGACAAGCTATGATTTACAAGTATTTGATGGCTTCTCTTCCTGTACCTTCTGATCTTCTCTCATTGGATGGTGGTTTCAATATGAGGTTATCATCAAGAAATAGAAGTAATAATGATCCAGAAGCAGGTAGATGCAAAAGAACAGATGGTAAAAAATGGAGATGTTCAAGAGATGTGGCTCCTAATAACAAGTATTGTGAAAGACATATGCATAGAGGTCGTCCCCGTTCAAGAAAGCCTGTGGAACTTCAAACCAATGACAATAATCATCATCAAATCAAAAGGGCTCGTTGTGATTCTAATCCTTTTTCTGTTCCTGATGTTACTTTGGCTATGCCTAATCCATCTACAAGGAAATATGGTGGATCTACTGCTTTTCATCCTTATCATCAATCTTCCCTTTCTTTGGATAATAATAGCTTTGGTATCAAACCTCCAAACTTTGACTTTTCAAATAAGCAGCCAAGGGGCTTGGAATGGATGCTAAATGGAGATCCAATATGTCTTGGTGCTTCTAACTCAGGATGGCACTCTCTAATGCATAACAACAAACTTGGATTAACCAATGAAAGTTCTTATCAAAATAACACTGAATCTCAGTATCTGAATTCATTTCCACTATATACTACTTCTGAACTTTCTCAACATCCAATGCAAACTCTTCAATCTGAGAAACCAAGAGGTTTTACTTTCATTGATGCTTGGTCTAATGCAGAAACAATTGAAAACAATGCCAACACAAATAACAATGTTTCTGCTACATCAATTGGTAAATTATCTCTTTCATCTCTTGATTTATCAATGGGAGGTCCATTAGCTGAAGTTTTGAGGCCAAGTAATGTAACTTCCATAAGTGATGCAACAAACTCTAATCCATCTTCACCTGTTGGAACAAACCATGTTGAATCTATTGGAACTTCAGGAGGAACAGGAATGTTTTCATCTCCTTCTGGTGTTTTGCATAATAAAACACTTGCTTCTTTTTCTGATAGTAGTGGTAATAGTAGTCCAACTATTGCTTCATCAAGGGTCAATTCTGAAATTGCTTTACTCAACAAGTTTGATCAAATTTCTTATGTAAATTAA 1506 0.3712 MSEFHVQDKEPNKKTNNNNSNTSSSVLLGSGVKLQCFEGFSNKNMMLQQQNHQHHSFSFDHHHDSSAVPDGYGPTTYKISFVGDSDSSALDATTTIDNGAVPLNLQPFHNISATTTLKPSVGMAASLGYPFTISQWKELERQAMIYKYLMASLPVPSDLLSLDGGFNMRLSSRNRSNNDPEAGRCKRTDGKKWRCSRDVAPNNKYCERHMHRGRPRSRKPVELQTNDNNHHQIKRARCDSNPFSVPDVTLAMPNPSTRKYGGSTAFHPYHQSSLSLDNNSFGIKPPNFDFSNKQPRGLEWMLNGDPICLGASNSGWHSLMHNNKLGLTNESSYQNNTESQYLNSFPLYTTSELSQHPMQTLQSEKPRGFTFIDAWSNAETIENNANTNNNVSATSIGKLSLSSLDLSMGGPLAEVLRPSNVTSISDATNSNPSSPVGTNHVESIGTSGGTGMFSSPSGVLHNKTLASFSDSSGNSSPTIASSRVNSEIALLNKFDQISYVN 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03983 501 ProSiteProfiles WRC domain profile. 179 223 IPR014977 -
Trre5g03983 501 ProSiteProfiles QLQ domain profile. 130 165 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre5g03983 501 SMART QLQ_2 129 165 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre5g03983 501 PANTHER GROWTH-REGULATING FACTOR 5 86 400 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre5g03983 501 Pfam WRC 180 222 IPR014977 -
Trre5g03983 501 Pfam QLQ 130 160 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre5g03983 501 MobiDBLite consensus disorder prediction 1 25 - -
Trre5g03983 501 MobiDBLite consensus disorder prediction 423 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03983 Trre-Chr5 41069292 41071837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03983 130 228 GRF Transcription Factor Family AT4G37740 54.310 1.02e-33 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre5g03983 WRC 2.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03983 - - mtr:11444759 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03983 5 41069292 41071837 Trre5g03983 5 41069292 41071837 ECH